myRT

myRT report for GCA_002053945.1_ASM205394v1

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Seq: MYNE01000017.1 Salmonella enterica strain BCW_4942 NODE_17_length_26888_cov_8.08742, whole genome shotgun sequence (26888 bp)
Overview 1 RT 1: 21804-26779 bp Neighborhood of RT #1 [21804, 26779] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 21804-23450 bp Feature: domain Description: groEL Location: 21810-23436 bp Feature: domain Description: groEL Location: 21 81 0-23436 bp Feature: gene Location: 23787-24113 bp Feature: gene Location: 24544-26217 bp Feature: RT Description: RVT_N Location: 24607-24841 bp Feature: RT Description: RVT_N Location: 24607-24841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24895-25540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24895-25540 bp Feature: domain Description: GIIM Note: maturase Location: 25594-25825 bp Feature: domain Description: GIIM Note: maturase Location: 25594-25825 bp Feature: domain Description: HNHc Note: nucleases Location: 26035-26191 bp Feature: domain Description: HNHc Note: nucleases Location: 26035-261 91 bp Feature: gene Location: 26366-26593 bp Feature: domain Description: DUF2188 Location: 26381-26558 bp Feature: domain Description: DUF21 88 Location: 26381 -26558 bp Feature: gene Location: 26645-26779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)

Seq: MYNE01000371.1 Salmonella enterica strain BCW_4942 NODE_371_length_4148_cov_6.56646, whole genome shotgun sequence (4148 bp)
Overview 1 RT 1: 2-2801 bp Neighborhood of RT #1 [2, 3877] rve_3 RVT-Retrons AAA_15 Feature: gene Location: 2-271 bp Feature: domain Description: rve_3 Location: 32-230 bp Feature: domain Description: rve_3 Location: 32 -2 30 bp Feature: gene Location: 506-1612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 611-1214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 611-12 14 bp Feature: gene Location: 1790-3877 bp Feature: domain Description: AAA_15 Location: 1793-2801 bp Feature: domain Description: AAA_15 Location: 1793-2 801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), rve_3 (pfam13683), RVT-Retrons

Seq: MYNE01000380.1 Salmonella enterica strain BCW_4942 NODE_380_length_4002_cov_6.07362, whole genome shotgun sequence (4002 bp)
Overview 1 RT 1: 1280-3582 bp Neighborhood of RT #1 [1280, 3662] RVT-Retrons TIR-like Feature: gene Location: 1280-1408 bp Feature: gene Location: 1555-1782 bp Feature: gene Location: 1813-2772 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1993-2515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1993 -2515 bp Feature: gene Location: 2801-3199 bp Feature: gene Location: 3138-3662 bp Feature: domain Description: TIR-like Location: 3228-3582 bp Feature: domain Description: TIR-like Location: 3 228-3 582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR-like (pfam10137)