myRT

myRT report for GCA_002054965.1_ASM205496v1

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Seq: MYMO01000027.1 Salmonella enterica strain BCW_4958 NODE_27_length_37469_cov_1.27155, whole genome shotgun sequence (37469 bp)
Overview 1 RT 1: 23484-27129 bp Neighborhood of RT #1 [23484, 27131] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM Transposase_20 COG3547 Feature: gene Location: 23484-23705 bp Feature: gene Location: 23735-25012 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 23858-24320 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 23858-24320 bp Feature: domain Description: Transposase_20 Location: 24647-24890 bp Feature: domain Description: Transposase_20 Location: 24647-24890 bp Feature: gene Location: 25162-26004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25168-25642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 68-25642 bp Feature: domain Description: GIIM Note: maturase Location: 25762-25930 bp Feature: domain Description: GIIM Note: maturase Location: 25762-25930 bp Feature: gene Location: 26443-26616 bp Feature: domain Description: Transposase_20 Location: 26446-26590 bp Feature: domain Description: Transposase_20 Location: 26446-26590 bp Feature: gene Location: 26685-27131 bp Feature: domain Description: COG3547 Location: 26694-27129 bp Feature: domain Description: COG3547 Location: 26694-271 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MYMO01000002.1 Salmonella enterica strain BCW_4958 NODE_2_length_423468_cov_0.601668, whole genome shotgun sequence (423468 bp)
Overview 1 RT 1: 305318-311208 bp Neighborhood of RT #1 [305318, 311210] HTH_Hin_like HTH_Tnp_1 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 305318-305449 bp Feature: domain Description: HTH_Hin_like Location: 305324-305429 bp Feature: domain Description: HTH_Hin_like Location: 30532 4-30542 9 bp Feature: gene Location: 305835-306272 bp Feature: domain Description: HTH_Tnp_1 Location: 305850-305967 bp Feature: domain Description: HTH_Tnp_1 Location: 305850-305967 bp Feature: gene Location: 306322-307953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306637-307234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306637-3072 34 bp Feature: domain Description: TIR_2 Location: 307558-307918 bp Feature: domain Description: TIR_2 Location: 307558-307918 bp Feature: gene Location: 308542-310875 bp Feature: domain Description: Prim_Zn_Ribbon Location: 308632-308740 bp Feature: domain Description: Prim_Zn_Ribbon Location: 308632 -308740 bp Feature: domain Description: COG3378 Location: 309358-310867 bp Feature: domain Description: COG3378 Location: 309358-310867 bp Feature: gene Location: 310890-311210 bp Feature: domain Description: DUF5375 Location: 310893-311208 bp Feature: domain Description: DUF5375 Location: 310893-3112 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), HTH_Tnp_1 (pfam01527), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)