myRT

myRT report for GCA_002054985.1_ASM205498v1

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Seq: MYMP01000001.1 Salmonella enterica strain BCW_4957 NODE_1_length_483703_cov_4.76063, whole genome shotgun sequence (483703 bp)
Overview 1 RT 1: 335386-341258 bp Neighborhood of RT #1 [335386, 341278] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 335386-335706 bp Feature: domain Description: DUF5375 Location: 335389-335704 bp Feature: domain Description: DUF5375 Location: 335389-335704 bp Feature: gene Location: 335721-338054 bp Feature: domain Description: Prim_Zn_Ribbon Location: 335811-335919 bp Feature: domain Description: Prim_Zn_Ribbon Location: 33581 1 -33591 9 bp Feature: domain Description: COG3378 Location: 336537-338046 bp Feature: domain Description: COG3378 Location: 336537-338046 bp Feature: gene Location: 338643-340274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 338958-339555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 338958-339555 bp Feature: domain Description: TIR_2 Location: 339879-340239 bp Feature: domain Description: TIR_2 Location: 339879-340239 bp Feature: gene Location: 340324-340761 bp Feature: domain Description: HTH_Tnp_1 Location: 340339-340456 bp Feature: domain Description: HTH_Tnp_1 Location: 340339-340456 bp Feature: gene Location: 341147-341278 bp Feature: domain Description: HTH_Hin_like Location: 341153-341258 bp Feature: domain Description: HTH_Hin_like Location: 341 1 53-341 258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569)

Seq: MYMP01000271.1 Salmonella enterica strain BCW_4957 NODE_271_length_324_cov_0.502146, whole genome shotgun sequence (324 bp)
Overview 1 RT 1: 1-121 bp Neighborhood of RT #1 [1, 306] RVT-UG11 Feature: gene Location: 1-306 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4-121 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4-12 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11