myRT

myRT report for GCA_002065995.1_ASM206599v1

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Seq: MYDQ01000001.1 Salmonella enterica subsp. enterica serovar Chandans strain BCW_2656 NODE_1_length_983801_cov_0.725998, whole genome shotgun sequence (983801 bp)
Overview 1 RT 1: 44403-48982 bp 2 RT 2: 57168-67744 bp Neighborhood of RT #1 [44403, 49482] SLATT_5 RVT-UG17 ANK ANK Neighborhood of RT #2 [57168, 67785] AlpA RVT-UG8 InsE RVT-Retrons TIR-like Tra5 Feature: gene Location: 44403-44549 bp Feature: gene Location: 45079-45630 bp Feature: domain Description: SLATT_5 Location: 45097-45616 bp Feature: domain Description: SLATT_5 Location: 45097-4561 6 bp Feature: gene Location: 45569-46996 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 45854-46460 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 45854-46460 bp Feature: gene Location: 47510-48232 bp Feature: gene Location: 48496-49482 bp Feature: domain Description: ANK Location: 48550-48796 bp Feature: domain Description: ANK Location: 48550-48796 bp Feature: domain Description: ANK Location: 48823-48982 bp Feature: domain Description: ANK Location: 48823-48982 bp Feature: gene Location: 57168-57377 bp Feature: domain Description: AlpA Location: 57174-57363 bp Feature: domain Description: AlpA Location: 571 74-57363 bp Feature: gene Location: 57500-58351 bp Feature: gene Location: 59956-61968 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 60532-60982 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 60532-60982 bp Feature: gene Location: 62489-62722 bp Feature: gene Location: 63265-63567 bp Feature: domain Description: InsE Location: 63274-63556 bp Feature: domain Description: InsE Location: 63274-63556 bp Feature: gene Location: 64523-64654 bp Feature: gene Location: 64801-65028 bp Feature: gene Location: 65059-66018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65239-65761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65239-65761 bp Feature: gene Location: 66068-66907 bp Feature: domain Description: TIR-like Location: 66473-66827 bp Feature: domain Description: TIR-like Location: 66473-66827 bp Feature: gene Location: 67162-67785 bp Feature: domain Description: Tra5 Location: 67258-67744 bp Feature: domain Description: Tra5 Location: 67258-67744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, ANK (smart00248), AlpA (COG3311), RVT-UG8, InsE (COG2963), RVT-Retrons, TIR-like (pfam10137), Tra5 (COG2801)