myRT

myRT report for GCA_002066965.1_ASM206696v1

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Seq: MXVO01000044.1 Salmonella enterica subsp. enterica serovar Wippra strain BCW_2903 NODE_44_length_36344_cov_0.767911, whole genome shotgun sequence (36344 bp)
Overview 1 RT 1: 19078-22601 bp Neighborhood of RT #1 [19078, 22601] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 19078-19443 bp Feature: domain Description: DUF4156 Location: 19159-19435 bp Feature: domain Description: DUF41 56 Location: 1 91 59-1 9435 bp Feature: gene Location: 19795-20022 bp Feature: domain Description: DUF2188 Location: 19810-19987 bp Feature: domain Description: DUF21 88 Location: 1 981 0-1 9987 bp Feature: gene Location: 20171-21844 bp Feature: RT Description: RVT_N Location: 20234-20468 bp Feature: RT Description: RVT_N Location: 20234-20468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20522-21167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20522-21 1 67 bp Feature: domain Description: GIIM Note: maturase Location: 21221-21452 bp Feature: domain Description: GIIM Note: maturase Location: 21 221 -21 452 bp Feature: domain Description: HNHc Note: nucleases Location: 21662-21818 bp Feature: domain Description: HNHc Note: nucleases Location: 21 662-21 81 8 bp Feature: gene Location: 21982-22218 bp Feature: gene Location: 22275-22601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MXVO01000045.1 Salmonella enterica subsp. enterica serovar Wippra strain BCW_2903 NODE_45_length_36337_cov_0.922135, whole genome shotgun sequence (36337 bp)
Overview 1 RT 1: 25472-29002 bp Neighborhood of RT #1 [25472, 29022] PRK09692 RVT-Retrons HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 25472-25720 bp Feature: domain Description: PRK09692 Location: 25481-25649 bp Feature: domain Description: PRK09692 Location: 2 5481-2 5649 bp Feature: gene Location: 26021-26974 bp Feature: gene Location: 26961-27911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27060-27651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7060-2 7651 bp Feature: gene Location: 28119-28478 bp Feature: domain Description: HTH_Tnp_1 Location: 28137-28251 bp Feature: domain Description: HTH_Tnp_1 Location: 2 8137-2 82 51 bp Feature: gene Location: 28891-29022 bp Feature: domain Description: HTH_Hin_like Location: 28900-29002 bp Feature: domain Description: HTH_Hin_like Location: 2 8900-2 9002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569)