myRT

myRT report for GCA_002067205.1_ASM206720v1

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Seq: MVQL01000195.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000196, whole genome shotgun sequence (5292 bp)
Overview 1 RT 1: 2929-4750 bp Neighborhood of RT #1 [2929, 4761] UbiX RVT-GII Feature: gene Location: 2929-3510 bp Ori: OPX87296.1 Gene: pad1_3 Feature: domain Description: UbiX Location: 2941-3493 bp Feature: domain Description: UbiX Location: 2941 -3493 bp Feature: gene Location: 4150-4248 bp Feature: gene Location: 4318-4761 bp Ori: OPX87298.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4522-4750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4522-4750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiX (COG0163), RVT-GII

Seq: MVQL01000197.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000198, whole genome shotgun sequence (18022 bp)
Overview 1 RT 1: 13713-17557 bp Neighborhood of RT #1 [13713, 17904] YurZ PHA02517 RVT-GII RVT-GII Feature: gene Location: 13713-14036 bp Ori: OPX87248.1 Feature: domain Description: YurZ Location: 13716-13992 bp Feature: domain Description: YurZ Location: 13716-13992 bp Feature: gene Location: 15150-15548 bp Ori: OPX87249.1 Feature: domain Description: PHA02517 Location: 15156-15531 bp Feature: domain Description: PHA02 517 Location: 15156-15531 bp Feature: gene Location: 15757-16509 bp Ori: OPX87250.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15763-16129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15763-1612 9 bp Feature: gene Location: 16729-17904 bp Ori: OPX87251.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16870-17557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16870-17557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YurZ (COG0599), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: MVQL01000134.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000134, whole genome shotgun sequence (121996 bp)
Overview 1 RT 1: 65603-69546 bp Neighborhood of RT #1 [65603, 69578] DEDD_Tnp_IS110 RVT-GII RVT-GII Intron_maturas2 DEDD_Tnp_IS110 OmpR Feature: gene Location: 65603-65773 bp Feature: gene Location: 66078-66293 bp Ori: OPX90060.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 66105-66285 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 66105-66285 bp Feature: gene Location: 66806-67417 bp Ori: OPX90061.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67070-67409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67070-67409 bp Feature: gene Location: 67470-68600 bp Ori: OPX90062.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67698-67893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67698-67893 bp Feature: domain Description: Intron_maturas2 Location: 67980-68274 bp Feature: domain Description: Intron_maturas2 Location: 67980-68274 bp Feature: gene Location: 68689-69321 bp Ori: OPX90063.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 68719-68953 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 68719-68953 bp Feature: gene Location: 69258-69578 bp Ori: OPX90064.1 Gene: pleD_7 Feature: domain Description: OmpR Location: 69309-69546 bp Feature: domain Description: OmpR Location: 693 09-69546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-GII, Intron_maturas2 (pfam01348), OmpR (COG0745)

Seq: MVQL01000123.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000123, whole genome shotgun sequence (24417 bp)
Overview 1 RT 1: 7125-13351 bp Neighborhood of RT #1 [7125, 13351] Sortilin-Vps10 BNR Sortilin-Vps10 Cu_amine_oxidN1 tynA Cu_amine_oxidN1 RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 7125-8612 bp Ori: OPX90741.1 Gene: hcf136 Feature: domain Description: Sortilin-Vps10 Location: 7314-7581 bp Feature: domain Description: Sortilin-Vps10 Location: 7314 -7581 bp Feature: domain Description: BNR Location: 7668-7695 bp Feature: domain Description: BNR Location: 7668-7695 bp Feature: domain Description: Sortilin-Vps10 Location: 7938-8121 bp Feature: domain Description: Sortilin-Vps10 Location: 7938-8121 bp Feature: domain Description: Cu_amine_oxidN1 Location: 8238-8355 bp Feature: domain Description: Cu_amine_oxidN1 Location: 8238-8355 bp Feature: domain Description: tynA Location: 8367-8562 bp Feature: domain Description: tynA Location: 8367-8562 bp Feature: gene Location: 8631-9533 bp Ori: OPX90742.1 Feature: domain Description: Cu_amine_oxidN1 Location: 9069-9285 bp Feature: domain Description: Cu_amine_oxidN1 Location: 9069-9285 bp Feature: gene Location: 9708-10322 bp Ori: OPX90743.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9738-9876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9738-9876 bp Feature: domain Description: GIIM Note: maturase Location: 9930-10155 bp Feature: domain Description: GIIM Note: maturase Location: 9930-10155 bp Feature: gene Location: 10375-11622 bp Ori: OPX90744.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10579-11236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10579-11236 bp Feature: domain Description: GIIM Note: maturase Location: 11317-11548 bp Feature: domain Description: GIIM Note: maturase Location: 11317-1154 8 bp Feature: gene Location: 12132-12740 bp Ori: OPX90745.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12240-12717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224 0-12717 bp Feature: gene Location: 12731-12988 bp Feature: gene Location: 13064-13351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sortilin-Vps10 (pfam15902), BNR (pfam02012), Cu_amine_oxidN1 (pfam07833), tynA (PRK14696), RVT-GII, GIIM (pfam08388)

Seq: MVQL01000114.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000114, whole genome shotgun sequence (7439 bp)
Overview 1 RT 1: 3944-7196 bp Neighborhood of RT #1 [3944, 7270] IS285 IS285 RVT-GII GIIM Feature: gene Location: 3944-4324 bp Ori: OPX91079.1 Feature: domain Description: IS285 Location: 3947-4301 bp Feature: domain Description: IS285 Location: 3947-4301 bp Feature: gene Location: 4523-5740 bp Ori: OPX91080.1 Feature: domain Description: IS285 Location: 4556-5723 bp Feature: domain Description: IS285 Location: 45 5 6-5 723 bp Feature: gene Location: 5963-7270 bp Ori: OPX91081.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6218-6911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6218-6911 bp Feature: domain Description: GIIM Note: maturase Location: 6980-7196 bp Feature: domain Description: GIIM Note: maturase Location: 6980-7196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388)

Seq: MVQL01000044.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000044, whole genome shotgun sequence (4874 bp)
Overview 1 RT 1: 1422-4332 bp Neighborhood of RT #1 [1422, 4343] INT_RitA_C_like INT_RitB_C_like RVT-GII Feature: gene Location: 1422-2657 bp Ori: OPX93159.1 Feature: domain Description: INT_RitA_C_like Location: 2073-2610 bp Feature: domain Description: INT_RitA_C_like Location: 2073-26 10 bp Feature: gene Location: 2790-3044 bp Ori: OPX93160.1 Feature: domain Description: INT_RitB_C_like Location: 2799-2952 bp Feature: domain Description: INT_RitB_C_like Location: 2799-2952 bp Feature: gene Location: 3840-4343 bp Ori: OPX93161.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095-4332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095-4332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), RVT-GII

Seq: MVQL01000097.1 Pelotomaculum sp. PtaB.Bin104 A4E53_contig000097, whole genome shotgun sequence (4125 bp)
Overview 1 RT 1: 1607-4066 bp Neighborhood of RT #1 [1607, 4077] Response_reg Cu_amine_oxidN1 RVT-GII Feature: gene Location: 1607-1987 bp Ori: OPX91701.1 Gene: yehT_1 Feature: domain Description: Response_reg Location: 1637-1853 bp Feature: domain Description: Response_reg Location: 1637 -1853 bp Feature: gene Location: 2453-3703 bp Ori: OPX91702.1 Gene: maoA_1 Feature: domain Description: Cu_amine_oxidN1 Location: 3305-3452 bp Feature: domain Description: Cu_amine_oxidN1 Location: 3305-3452 bp Feature: gene Location: 3763-4077 bp Ori: OPX91703.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3832-4066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3832-4066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Response_reg (pfam00072), Cu_amine_oxidN1 (pfam07833), RVT-GII