myRT

myRT report for GCA_002067405.1_ASM206740v1

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Seq: MVRP01000128.1 Syntrophorhabdaceae bacterium PtaU1.Bin034 A4E57_contig000128, whole genome shotgun sequence (11663 bp)
Overview 1 RT 1: 513-10466 bp Neighborhood of RT #1 [513, 10510] COG4933 RVT-Retrons DUF3800 YjgR YjgR SIR2_2 RVT-UG7 AlpA Feature: gene Location: 513-956 bp Ori: OPY65049.1 Feature: domain Description: COG4933 Location: 528-879 bp Feature: domain Description: COG4933 Location: 528-879 bp Feature: gene Location: 964-1407 bp Feature: gene Location: 1465-2448 bp Ori: OPY65051.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1597-2152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 597-21 52 bp Feature: gene Location: 2570-3337 bp Ori: OPY65052.1 Feature: domain Description: DUF3800 Location: 2588-3176 bp Feature: domain Description: DUF3800 Location: 2588-31 76 bp Feature: gene Location: 3838-5931 bp Ori: OPY65053.1 Feature: domain Description: YjgR Location: 4273-4567 bp Feature: domain Description: YjgR Location: 4273-4567 bp Feature: domain Description: YjgR Location: 5365-5830 bp Feature: domain Description: YjgR Location: 5365-5830 bp Feature: gene Location: 5949-7238 bp Ori: OPY65054.1 Feature: domain Description: SIR2_2 Location: 6510-7056 bp Feature: domain Description: SIR2_2 Location: 651 0-7056 bp Feature: gene Location: 7458-8108 bp Feature: gene Location: 8244-9809 bp Ori: OPY65056.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8652-9051 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8652-9051 bp Feature: gene Location: 10029-10220 bp Feature: gene Location: 10313-10510 bp Ori: OPY65058.1 Feature: domain Description: AlpA Location: 10319-10466 bp Feature: domain Description: AlpA Location: 1 031 9-1 0466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4933 (Predicted transcriptional regulator, contains an HTH and PUA-like domains ), RVT-Retrons, DUF3800 (pfam12686), YjgR (COG0433), SIR2_2 (pfam13289), RVT-UG7, AlpA (COG3311)

Seq: MVRP01000010.1 Syntrophorhabdaceae bacterium PtaU1.Bin034 A4E57_contig000010, whole genome shotgun sequence (52461 bp)
Overview 1 RT 1: 40701-49838 bp Neighborhood of RT #1 [40701, 49838] RRM_HP0827_like TIGR03986 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 40701-41192 bp Feature: gene Location: 41189-43387 bp Ori: OPY70135.1 Feature: domain Description: RRM_HP0827_like Location: 41195-41435 bp Feature: domain Description: RRM_HP082 7_like Location: 41195-41435 bp Feature: domain Description: TIGR03986 Location: 42245-43142 bp Feature: domain Description: TIGR03986 Location: 42 2 45-43142 bp Feature: gene Location: 43400-46126 bp Ori: OPY70136.1 Gene: cas1_1 Feature: domain Description: CRISPR_Cas6 Location: 44051-44222 bp Feature: domain Description: CRISPR_Cas6 Location: 44051-442 2 2 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 44462-45035 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 44462 -45035 bp Feature: domain Description: Cas1_I-II-III Location: 45203-46091 bp Feature: domain Description: Cas1_I-II-III Location: 452 03-46091 bp Feature: gene Location: 46128-46388 bp Ori: OPY70137.1 Gene: cas2_1 Feature: domain Description: Cas2_I_II_III Location: 46137-46347 bp Feature: domain Description: Cas2 _I_II_III Location: 46137-46347 bp Feature: gene Location: 47769-49838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRM_HP0827_like (cd12399), TIGR03986 (CRISPR-associated protein), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: MVRP01000104.1 Syntrophorhabdaceae bacterium PtaU1.Bin034 A4E57_contig000104, whole genome shotgun sequence (13216 bp)
Overview 1 RT 1: 2829-9795 bp Neighborhood of RT #1 [2829, 9795] ABCL CoxM RVT-CRISPR-like RAMPs RAMPs TIGR03986 Feature: gene Location: 2829-3017 bp Ori: OPY65760.1 Feature: domain Description: ABCL Location: 2835-2973 bp Feature: domain Description: ABCL Location: 283 5-2973 bp Feature: gene Location: 3075-3302 bp Ori: OPY65761.1 Gene: cutM_5 Feature: domain Description: CoxM Location: 3096-3285 bp Feature: domain Description: CoxM Location: 3 096-3 285 bp Feature: gene Location: 3263-3763 bp Ori: OPY65762.1 Gene: ltrA Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3476-3731 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3 476-3 73 1 bp Feature: gene Location: 4770-8738 bp Ori: OPY65763.1 Feature: domain Description: RAMPs Location: 4905-5388 bp Feature: domain Description: RAMPs Location: 4905-53 88 bp Feature: domain Description: RAMPs Location: 5727-6192 bp Feature: domain Description: RAMPs Location: 5727-6192 bp Feature: domain Description: TIGR03986 Location: 6378-8262 bp Feature: domain Description: TIGR03 986 Location: 63 78-8262 bp Feature: gene Location: 8743-9795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABCL (cd05958), CoxM (COG1319), RVT-CRISPR, RAMPs (pfam03787), TIGR03986 (CRISPR-associated protein)