myRT

myRT report for GCA_002069335.1_ASM206933v1

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Seq: MWAJ01001053.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig001055, whole genome shotgun sequence (1702 bp)
Overview 1 RT 1: 22-1276 bp Neighborhood of RT #1 [22, 1506] RVT-Retrons Feature: gene Location: 22-1506 bp Ori: OPZ83909.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 658-1276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 658-1 276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MWAJ01000172.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig000172, whole genome shotgun sequence (6478 bp)
Overview 1 RT 1: 1837-6166 bp Neighborhood of RT #1 [1837, 6195] WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep CRISPR_Cas6 RVT-CRISPR HAD_SAK_2 Feature: gene Location: 1837-2178 bp Feature: gene Location: 2275-3483 bp Ori: OPZ92439.1 Feature: domain Description: WG_beta_rep Location: 2419-2521 bp Feature: domain Description: WG_beta_rep Location: 2 419-2 52 1 bp Feature: domain Description: WG_beta_rep Location: 2521-2623 bp Feature: domain Description: WG_beta_rep Location: 2 52 1-2 62 3 bp Feature: domain Description: WG_beta_rep Location: 2623-2725 bp Feature: domain Description: WG_beta_rep Location: 2 62 3-2 72 5 bp Feature: domain Description: WG_beta_rep Location: 2725-2827 bp Feature: domain Description: WG_beta_rep Location: 2 72 5-2 82 7 bp Feature: domain Description: WG_beta_rep Location: 2827-2926 bp Feature: domain Description: WG_beta_rep Location: 2 82 7-2 92 6 bp Feature: domain Description: WG_beta_rep Location: 2932-3028 bp Feature: domain Description: WG_beta_rep Location: 2 932 -302 8 bp Feature: domain Description: WG_beta_rep Location: 3034-3136 bp Feature: domain Description: WG_beta_rep Location: 3034-3136 bp Feature: domain Description: WG_beta_rep Location: 3136-3235 bp Feature: domain Description: WG_beta_rep Location: 3136-32 35 bp Feature: domain Description: WG_beta_rep Location: 3241-3340 bp Feature: domain Description: WG_beta_rep Location: 32 41-3340 bp Feature: domain Description: WG_beta_rep Location: 3340-3442 bp Feature: domain Description: WG_beta_rep Location: 3340-3442 bp Feature: gene Location: 3665-5407 bp Ori: OPZ92440.1 Gene: ltrA_2 Feature: domain Description: CRISPR_Cas6 Location: 4175-4532 bp Feature: domain Description: CRISPR_Cas6 Location: 4175-4532 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4670-5285 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4670-52 85 bp Feature: gene Location: 5689-6195 bp Ori: OPZ92441.1 Feature: domain Description: HAD_SAK_2 Location: 5701-6166 bp Feature: domain Description: HAD_SAK_2 Location: 5701-6166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WG_beta_rep (pfam14903), CRISPR_Cas6 (pfam10040), RVT-CRISPR, HAD_SAK_2 (pfam18143)

Seq: MWAJ01000197.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig000197, whole genome shotgun sequence (6105 bp)
Overview 1 RT 1: 4105-5913 bp Neighborhood of RT #1 [4105, 6074] Imm6 SMI1_KNR4 RVT-GII GIIM Feature: gene Location: 4105-4638 bp Ori: OPZ92155.1 Feature: domain Description: Imm6 Location: 4141-4489 bp Feature: domain Description: Imm6 Location: 4141-4489 bp Feature: gene Location: 4888-5226 bp Ori: OPZ92156.1 Feature: domain Description: SMI1_KNR4 Location: 4936-5107 bp Feature: domain Description: SMI1_KNR4 Location: 493 6-5107 bp Feature: gene Location: 5397-6074 bp Ori: OPZ92157.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5400-5631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5400-563 1 bp Feature: domain Description: GIIM Note: maturase Location: 5685-5913 bp Feature: domain Description: GIIM Note: maturase Location: 5685-5913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imm6 (pfam14434), SMI1_KNR4 (smart00860), RVT-GII, GIIM (pfam08388)

Seq: MWAJ01000763.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig000765, whole genome shotgun sequence (2848 bp)
Overview 1 RT 1: 694-1696 bp Neighborhood of RT #1 [694, 2577] RVT-GII Feature: gene Location: 694-2577 bp Ori: OPZ86015.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MWAJ01000692.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig000694, whole genome shotgun sequence (3071 bp)
Overview 1 RT 1: 175-2606 bp Neighborhood of RT #1 [175, 2773] RimL RVT-GII GIIM Feature: gene Location: 175-750 bp Ori: OPZ86692.1 Feature: domain Description: RimL Location: 307-694 bp Feature: domain Description: RimL Location: 307-694 bp Feature: gene Location: 1499-2773 bp Ori: OPZ86693.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712-2333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712-2333 bp Feature: domain Description: GIIM Note: maturase Location: 2375-2606 bp Feature: domain Description: GIIM Note: maturase Location: 2375 -2606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), RVT-GII, GIIM (pfam08388)

Seq: MWAJ01000496.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig000498, whole genome shotgun sequence (3845 bp)
Overview 1 RT 1: 47-2985 bp Neighborhood of RT #1 [47, 3386] TOMM_pelo FAA1 RVT-UG26 Feature: gene Location: 47-265 bp Ori: OPZ88756.1 Feature: domain Description: TOMM_pelo Location: 71-176 bp Feature: domain Description: TOMM_pelo Location: 71-176 bp Feature: gene Location: 387-2033 bp Ori: OPZ88757.1 Feature: domain Description: FAA1 Location: 414-1983 bp Feature: domain Description: FAA1 Location: 414-1983 bp Feature: gene Location: 2169-3386 bp Ori: OPZ88758.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2367-2985 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 236 7-2985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TOMM_pelo (TIGR03793), FAA1 (COG1022), RVT-UG26

Seq: MWAJ01000163.1 Firmicutes bacterium ADurb.Bin419 BWY74_contig000163, whole genome shotgun sequence (6580 bp)
Overview 1 RT 1: 690-3157 bp Neighborhood of RT #1 [690, 3162] RVT-GII GIIM InsE PHA02517 Feature: gene Location: 690-1865 bp Ori: OPZ92553.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 98-1419 bp Feature: domain Description: GIIM Note: maturase Location: 1470-1701 bp Feature: domain Description: GIIM Note: maturase Location: 147 0-17 01 bp Feature: gene Location: 2018-2305 bp Ori: OPZ92554.1 Feature: domain Description: InsE Location: 2039-2291 bp Feature: domain Description: InsE Location: 2039-2291 bp Feature: gene Location: 2557-3162 bp Ori: OPZ92555.1 Feature: domain Description: PHA02517 Location: 2560-3157 bp Feature: domain Description: PHA02517 Location: 2560-3157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)