myRT

myRT report for GCA_002073135.1_ASM207313v1

Download annotations/find similar RTs

Seq: MVKS01000084.1 Vibrio vulnificus strain VN-0108 chromosome 1 VN0108_CH1_contig_84, whole genome shotgun sequence (99915 bp)
Overview 1 RT 1: 71499-75862 bp Neighborhood of RT #1 [71499, 75862] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 71499-72236 bp Ori: OQK54954.1 Feature: domain Description: TIGR02646 Location: 71586-72060 bp Feature: domain Description: TIGR02646 Location: 71 586-72060 bp Feature: gene Location: 72233-73867 bp Ori: OQK54955.1 Feature: domain Description: COG3950 Location: 72443-73799 bp Feature: domain Description: COG3950 Location: 72443-73799 bp Feature: gene Location: 73857-74798 bp Ori: OQK54956.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73959-74553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73959-74553 bp Feature: gene Location: 75328-75435 bp Feature: gene Location: 75443-75862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: MVKS01000075.1 Vibrio vulnificus strain VN-0108 chromosome 1 VN0108_CH1_contig_75, whole genome shotgun sequence (80270 bp)
Overview 1 RT 1: 61291-68425 bp Neighborhood of RT #1 [61291, 68484] PRK09692 RVT-UG2 COG0610 RMtype1_S_TRD-CR_like RMtype1_S_TRD-CR_like Feature: gene Location: 61291-61524 bp Ori: OQK55962.1 Feature: domain Description: PRK09692 Location: 61300-61489 bp Feature: domain Description: PRK09692 Location: 61300-61489 bp Feature: gene Location: 62038-62235 bp Feature: gene Location: 62575-64230 bp Ori: OQK55964.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 62950-63835 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 62 950-63835 bp Feature: gene Location: 64287-67349 bp Ori: OQK55965.1 Feature: domain Description: COG0610 Location: 64299-66456 bp Feature: domain Description: COG0610 Location: 642 99-66456 bp Feature: gene Location: 67351-68484 bp Ori: OQK55966.1 Feature: domain Description: RMtype1_S_TRD-CR_like Location: 67372-67816 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 67372 -67816 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 67942-68425 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 67942 -6842 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_TRD-CR_like (cl38903)

Seq: MVKS01000115.1 Vibrio vulnificus strain VN-0108 VN0108_U_contig_4, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 39-1125 bp Neighborhood of RT #1 [39, 1349] RVT-GII GIIM Feature: gene Location: 39-1349 bp Ori: OQK50628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255-864 bp Feature: domain Description: GIIM Note: maturase Location: 921-1125 bp Feature: domain Description: GIIM Note: maturase Location: 921-1125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MVKS01000112.1 Vibrio vulnificus strain VN-0108 VN0108_U_contig_1, whole genome shotgun sequence (583 bp)
Overview 1 RT 1: 11-461 bp Neighborhood of RT #1 [11, 583] RVT-GII Feature: gene Location: 11-583 bp Ori: OQK50647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-4 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MVKS01000004.1 Vibrio vulnificus strain VN-0108 chromosome 1 VN0108_CH1_contig_4, whole genome shotgun sequence (79429 bp)
Overview 1 RT 1: 2462-5362 bp Neighborhood of RT #1 [2462, 5706] RVT-Retrons CSP_CDS TIGR02646 Feature: gene Location: 2462-2668 bp Feature: gene Location: 3102-3287 bp Feature: gene Location: 3321-4487 bp Ori: OQK60392.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3462-4017 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3462-4017 bp Feature: gene Location: 4480-4713 bp Ori: OQK60393.1 Feature: domain Description: CSP_CDS Location: 4510-4690 bp Feature: domain Description: CSP_CDS Location: 45 10-4690 bp Feature: gene Location: 4930-5706 bp Ori: OQK60394.1 Feature: domain Description: TIGR02646 Location: 5050-5362 bp Feature: domain Description: TIGR02646 Location: 5 05 0-5 362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CSP_CDS (cd04458), TIGR02646 (TIGR02646 family protein)