myRT

myRT report for GCA_002073145.1_ASM207314v1

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Seq: MVKT01000132.1 Vibrio vulnificus strain VN-0112 chromosome 2 VN0112_CH2_contig_22, whole genome shotgun sequence (50729 bp)
Overview 1 RT 1: 1-3335 bp Neighborhood of RT #1 [1, 3349] RVT-Retrons PRK07883 LolD Feature: gene Location: 1-259 bp Feature: gene Location: 259-1431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 403-976 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 403-976 bp Feature: gene Location: 2003-2617 bp Feature: domain Description: PRK07883 Location: 2021-2537 bp Feature: domain Description: PRK07883 Location: 2021 -2537 bp Feature: gene Location: 2657-3349 bp Feature: domain Description: LolD Location: 2678-3335 bp Feature: domain Description: LolD Location: 2678-3335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07883 (DEDD exonuclease domain-containing protein), RVT-Retrons, LolD (COG1136)

Seq: MVKT01000022.1 Vibrio vulnificus strain VN-0112 chromosome 1 VN0112_CH1_contig_22, whole genome shotgun sequence (193059 bp)
Overview 1 RT 1: 29708-37211 bp Neighborhood of RT #1 [29708, 37211] YjgR YjgR RVT_N RVT-GII GIIM recomb_XerD xerC Feature: gene Location: 29708-31390 bp Feature: domain Description: YjgR Location: 30095-30290 bp Feature: domain Description: YjgR Location: 30095-302 90 bp Feature: domain Description: YjgR Location: 30785-31292 bp Feature: domain Description: YjgR Location: 30785-312 92 bp Feature: gene Location: 31408-32631 bp Feature: gene Location: 33426-34898 bp Feature: RT Description: RVT_N Location: 33474-33717 bp Feature: RT Description: RVT_N Location: 33474-33717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33762-34389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33762 -34389 bp Feature: domain Description: GIIM Note: maturase Location: 34452-34674 bp Feature: domain Description: GIIM Note: maturase Location: 34452 -34674 bp Feature: gene Location: 35125-36645 bp Feature: domain Description: recomb_XerD Location: 35308-35461 bp Feature: domain Description: recomb_XerD Location: 35308-35461 bp Feature: domain Description: xerC Location: 35668-36226 bp Feature: domain Description: xerC Location: 35668-362 2 6 bp Feature: gene Location: 36672-37211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjgR (COG0433), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), recomb_XerD (TIGR02225), xerC (PRK01287)

Seq: MVKT01000048.1 Vibrio vulnificus strain VN-0112 chromosome 1 VN0112_CH1_contig_48, whole genome shotgun sequence (8663 bp)
Overview 1 RT 1: 2776-7869 bp Neighborhood of RT #1 [2776, 7869] Tae4 RVT-GII GIIM PAAR_2 Feature: gene Location: 2776-2985 bp Feature: gene Location: 2985-3488 bp Feature: domain Description: Tae4 Location: 3072-3477 bp Feature: domain Description: Tae4 Location: 3 072-3 477 bp Feature: gene Location: 4119-5480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4398-5091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 98-5091 bp Feature: domain Description: GIIM Note: maturase Location: 5175-5379 bp Feature: domain Description: GIIM Note: maturase Location: 5175-53 79 bp Feature: gene Location: 6171-7373 bp Feature: domain Description: PAAR_2 Location: 6213-6486 bp Feature: domain Description: PAAR_2 Location: 6213 -6486 bp Feature: gene Location: 7360-7869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tae4 (pfam14113), RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738)

Seq: MVKT01000099.1 Vibrio vulnificus strain VN-0112 chromosome 1 VN0112_CH1_contig_99, whole genome shotgun sequence (107297 bp)
Overview 1 RT 1: 103874-106313 bp Neighborhood of RT #1 [103874, 106537] ispD ftsB RVT_N RVT-GII GIIM Feature: gene Location: 103874-104587 bp Feature: domain Description: ispD Location: 103892-104576 bp Feature: domain Description: ispD Location: 103892-104 576 bp Feature: gene Location: 104587-104868 bp Feature: domain Description: ftsB Location: 104590-104863 bp Feature: domain Description: ftsB Location: 104 590-104 863 bp Feature: gene Location: 105065-106537 bp Feature: RT Description: RVT_N Location: 105113-105356 bp Feature: RT Description: RVT_N Location: 105113-105356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105401-106028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054 01-106028 bp Feature: domain Description: GIIM Note: maturase Location: 106085-106313 bp Feature: domain Description: GIIM Note: maturase Location: 106085-106313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispD (TIGR00453), ftsB (PRK00888), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)