myRT

myRT report for GCA_002073185.1_ASM207318v1

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Seq: MVKU01000022.1 Vibrio vulnificus strain VN-0092 chromosome 1 VN0092_CH1_contig_22, whole genome shotgun sequence (193051 bp)
Overview 1 RT 1: 29707-37210 bp Neighborhood of RT #1 [29707, 37210] YjgR YjgR RVT_N RVT-GII GIIM recomb_XerD xerC Feature: gene Location: 29707-31389 bp Feature: domain Description: YjgR Location: 30094-30289 bp Feature: domain Description: YjgR Location: 30094-30289 bp Feature: domain Description: YjgR Location: 30784-31291 bp Feature: domain Description: YjgR Location: 30784-31 291 bp Feature: gene Location: 31407-32630 bp Feature: gene Location: 33425-34897 bp Feature: RT Description: RVT_N Location: 33473-33716 bp Feature: RT Description: RVT_N Location: 33473-3371 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33761-34388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33761 -34388 bp Feature: domain Description: GIIM Note: maturase Location: 34451-34673 bp Feature: domain Description: GIIM Note: maturase Location: 34451 -34673 bp Feature: gene Location: 35124-36644 bp Feature: domain Description: recomb_XerD Location: 35307-35460 bp Feature: domain Description: recomb_XerD Location: 35307-35460 bp Feature: domain Description: xerC Location: 35667-36225 bp Feature: domain Description: xerC Location: 35667-36225 bp Feature: gene Location: 36671-37210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjgR (COG0433), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), recomb_XerD (TIGR02225), xerC (PRK01287)

Seq: MVKU01000140.1 Vibrio vulnificus strain VN-0092 chromosome 2 VN0092_CH2_contig_24, whole genome shotgun sequence (50727 bp)
Overview 1 RT 1: 1-3333 bp Neighborhood of RT #1 [1, 3347] RVT-Retrons PRK07883 LolD Feature: gene Location: 1-257 bp Feature: gene Location: 257-1429 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401-974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401-974 bp Feature: gene Location: 2001-2615 bp Feature: domain Description: PRK07883 Location: 2019-2535 bp Feature: domain Description: PRK07883 Location: 2 019-2 535 bp Feature: gene Location: 2655-3347 bp Feature: domain Description: LolD Location: 2676-3333 bp Feature: domain Description: LolD Location: 2 676-3333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07883 (DEDD exonuclease domain-containing protein), RVT-Retrons, LolD (COG1136)

Seq: MVKU01000185.1 Vibrio vulnificus strain VN-0092 VN0092_U_contig_43, whole genome shotgun sequence (1016 bp)
Overview 1 RT 1: 219-995 bp Neighborhood of RT #1 [219, 1016] RVT-GII GIIM Feature: gene Location: 219-326 bp Feature: gene Location: 326-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 29-73 7 bp Feature: domain Description: GIIM Note: maturase Location: 791-995 bp Feature: domain Description: GIIM Note: maturase Location: 791-995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MVKU01000155.1 Vibrio vulnificus strain VN-0092 VN0092_U_contig_13, whole genome shotgun sequence (1016 bp)
Overview 1 RT 1: 1-790 bp Neighborhood of RT #1 [1, 811] RVT-GII GIIM Feature: gene Location: 1-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-532 bp Feature: domain Description: GIIM Note: maturase Location: 586-790 bp Feature: domain Description: GIIM Note: maturase Location: 586-790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MVKU01000104.1 Vibrio vulnificus strain VN-0092 chromosome 1 VN0092_CH1_contig_104, whole genome shotgun sequence (245545 bp)
Overview 1 RT 1: 241920-244359 bp Neighborhood of RT #1 [241920, 244583] ispD ftsB RVT_N RVT-GII GIIM Feature: gene Location: 241920-242633 bp Feature: domain Description: ispD Location: 241938-242622 bp Feature: domain Description: ispD Location: 241938-242622 bp Feature: gene Location: 242633-242914 bp Feature: domain Description: ftsB Location: 242636-242909 bp Feature: domain Description: ftsB Location: 242636-242909 bp Feature: gene Location: 243111-244583 bp Feature: RT Description: RVT_N Location: 243159-243402 bp Feature: RT Description: RVT_N Location: 24315 9-243402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243447-244074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243447-244074 bp Feature: domain Description: GIIM Note: maturase Location: 244131-244359 bp Feature: domain Description: GIIM Note: maturase Location: 244131-24435 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispD (TIGR00453), ftsB (PRK00888), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MVKU01000048.1 Vibrio vulnificus strain VN-0092 chromosome 1 VN0092_CH1_contig_48, whole genome shotgun sequence (8661 bp)
Overview 1 RT 1: 2776-7869 bp Neighborhood of RT #1 [2776, 7869] Tae4 RVT-GII GIIM PAAR_2 Feature: gene Location: 2776-2985 bp Feature: gene Location: 2985-3488 bp Feature: domain Description: Tae4 Location: 3072-3477 bp Feature: domain Description: Tae4 Location: 3072-3477 bp Feature: gene Location: 4119-5480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4398-5091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4398-5091 bp Feature: domain Description: GIIM Note: maturase Location: 5175-5379 bp Feature: domain Description: GIIM Note: maturase Location: 5175-5379 bp Feature: gene Location: 6171-7373 bp Feature: domain Description: PAAR_2 Location: 6213-6486 bp Feature: domain Description: PAAR_2 Location: 6 213-6 486 bp Feature: gene Location: 7360-7869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tae4 (pfam14113), RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738)