myRT

myRT report for GCA_002077135.1_ASM207713v1

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Seq: LDOS01000001.1 Metallibacterium scheffleri strain DKE6 Contig_1, whole genome shotgun sequence (1178339 bp)
Overview 1 RT 1: 383028-395104 bp 2 RT 2: 545626-554448 bp 3 RT 3: 868748-872903 bp 4 RT 4: 1158791-1166316 bp Neighborhood of RT #1 [383028, 395109] CcmA PRK15066 RVT-GII GIIM MidA COG4190 MidA RVT-GII GIIM ligand_gated_channel YfdV Neighborhood of RT #2 [545626, 554453] OmpR PRK10446 RVT_N RVT-GII GIIM HNHc RDD Pilin Neighborhood of RT #3 [868748, 872903] rplM rpsI RVT-GII GIIM Neighborhood of RT #4 [1158791, 1166477] RVT-GII GIIM YcfA HicB_lk_antitox PEP_TPR_lipo TPR Sulfotransfer_3 Feature: gene Location: 383028-383966 bp Feature: domain Description: CcmA Location: 383040-383946 bp Feature: domain Description: CcmA Location: 383040-383946 bp Feature: gene Location: 383963-384736 bp Feature: domain Description: PRK15066 Location: 383975-384734 bp Feature: domain Description: PRK1 5066 Location: 383975-384734 bp Feature: gene Location: 384848-386068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385091-385715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385091 -38571 5 bp Feature: domain Description: GIIM Note: maturase Location: 385763-385946 bp Feature: domain Description: GIIM Note: maturase Location: 385763-385946 bp Feature: gene Location: 386750-388072 bp Feature: domain Description: MidA Location: 386942-388019 bp Feature: domain Description: MidA Location: 386942-38801 9 bp Feature: gene Location: 388116-388406 bp Feature: gene Location: 388403-388753 bp Feature: domain Description: COG4190 Location: 388445-388697 bp Feature: domain Description: COG41 90 Location: 388445-388697 bp Feature: gene Location: 388772-389059 bp Feature: domain Description: MidA Location: 388835-388988 bp Feature: domain Description: MidA Location: 388835-388988 bp Feature: gene Location: 389184-390581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389514-390132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38951 4-3901 32 bp Feature: domain Description: GIIM Note: maturase Location: 390183-390408 bp Feature: domain Description: GIIM Note: maturase Location: 3901 83-390408 bp Feature: gene Location: 391061-393964 bp Feature: domain Description: ligand_gated_channel Location: 391271-393962 bp Feature: domain Description: ligand_gated_channel Location: 391 271 -393962 bp Feature: gene Location: 394198-395109 bp Feature: domain Description: YfdV Location: 394216-395104 bp Feature: domain Description: YfdV Location: 39421 6-3951 04 bp Feature: gene Location: 545626-546432 bp Feature: domain Description: OmpR Location: 545746-546409 bp Feature: domain Description: OmpR Location: 545746-546409 bp Feature: gene Location: 546703-547620 bp Feature: domain Description: PRK10446 Location: 546748-547612 bp Feature: domain Description: PRK1 0446 Location: 546748-54761 2 bp Feature: gene Location: 547788-549413 bp Feature: domain Description: RVT_N Location: 547839-548082 bp Feature: domain Description: RVT_N Location: 547839-548082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548127-548751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5481 27-548751 bp Feature: domain Description: GIIM Note: maturase Location: 548808-549036 bp Feature: domain Description: GIIM Note: maturase Location: 548808-549036 bp Feature: domain Description: HNHc Note: nucleases Location: 549222-549393 bp Feature: domain Description: HNHc Note: nucleases Location: 549222-549393 bp Feature: gene Location: 550540-552834 bp Feature: gene Location: 552927-554453 bp Feature: domain Description: RDD Location: 553524-553938 bp Feature: domain Description: RDD Location: 553524-553938 bp Feature: domain Description: Pilin Location: 554133-554448 bp Feature: domain Description: Pilin Location: 5541 33-554448 bp Feature: gene Location: 868748-869176 bp Feature: domain Description: rplM Location: 868751-869171 bp Feature: domain Description: rplM Location: 868751 -8691 71 bp Feature: gene Location: 869185-869580 bp Feature: domain Description: rpsI Location: 869200-869578 bp Feature: domain Description: rpsI Location: 869200-869578 bp Feature: gene Location: 870123-871520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870453-871071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870453-871 071 bp Feature: domain Description: GIIM Note: maturase Location: 871122-871347 bp Feature: domain Description: GIIM Note: maturase Location: 871 1 22-871 347 bp Feature: gene Location: 871750-872034 bp Feature: gene Location: 872592-872903 bp Feature: gene Location: 1158791-1160140 bp Feature: gene Location: 1160403-1161977 bp Feature: gene Location: 1162457-1163767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162787-1163405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 62787-1 1 63405 bp Feature: domain Description: GIIM Note: maturase Location: 1163456-1163681 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 63456-1 1 63681 bp Feature: gene Location: 1164094-1164714 bp Feature: domain Description: YcfA Location: 1164097-1164187 bp Feature: domain Description: YcfA Location: 1 1 64097-1 1 641 87 bp Feature: domain Description: HicB_lk_antitox Location: 1164295-1164619 bp Feature: domain Description: HicB_lk_antitox Location: 1 1 64295-1 1 6461 9 bp Feature: gene Location: 1164894-1166477 bp Feature: domain Description: PEP_TPR_lipo Location: 1164939-1165221 bp Feature: domain Description: PEP_TPR_lipo Location: 1 1 64939-1 1 65221 bp Feature: domain Description: TPR Location: 1165230-1165617 bp Feature: domain Description: TPR Location: 1 1 65230-1 1 6561 7 bp Feature: domain Description: Sulfotransfer_3 Location: 1165755-1166316 bp Feature: domain Description: Sulfotransfer_3 Location: 1 1 65755-1 1 6631 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), PRK15066 (inner membrane transport permease; Provisional), RVT-GII, GIIM (pfam08388), MidA (COG1565), COG4190 (Predicted transcriptional regulator ), ligand_gated_channel (cd01347), YfdV (COG0679), OmpR (COG0745), PRK10446 (30S ribosomal protein S6--L-glutamate ligase)
RVT_N (pfam13655), HNHc (smart00507), RDD (pfam06271), Pilin (pfam00114), rplM (PRK09216), rpsI (PRK00132), YcfA (COG1724), HicB_lk_antitox (pfam15919), PEP_TPR_lipo (TIGR02917), TPR (smart00028)
Sulfotransfer_3 (pfam13469)

Seq: LDOS01000002.1 Metallibacterium scheffleri strain DKE6 Contig_2, whole genome shotgun sequence (2125675 bp)
Overview 1 RT 1: 3630-10735 bp 2 RT 2: 53975-59886 bp 3 RT 3: 63621-69262 bp 4 RT 4: 148315-151279 bp 5 RT 5: 1379208-1387585 bp 6 RT 6: 1409525-1415036 bp 7 RT 7: 1437799-1441603 bp 8 RT 8: 1464768-1470838 bp 9 RT 9: 1563118-1570404 bp Neighborhood of RT #1 [3630, 10896] RVT-GII GIIM YcfA HicB_lk_antitox PEP_TPR_lipo TPR Sulfotransfer_3 Neighborhood of RT #2 [53975, 60422] COG5421 COG5606 RVT-GII GIIM ExeA HTH_32 rve Neighborhood of RT #3 [63621, 69432] Gmd WcaG RVT-GII GIIM PotE Neighborhood of RT #4 [148315, 151359] COG4584 rve COG4584 RVT-GII GIIM Neighborhood of RT #5 [1379208, 1387590] cysS SufE RVT-GII GIIM PEP_TPR_lipo PEP_TPR_lipo DAP2 Neighborhood of RT #6 [1409525, 1415036] GIY-YIG_unchar_3 IS285 RVT-GII GIIM GT4_WbuB-like Neighborhood of RT #7 [1437799, 1441603] NT_KNTase_like NT_KNTase_like RVT-GII GIIM NT_KNTase_like Neighborhood of RT #8 [1464768, 1470894] Peptidase_S46 RVT-GII GIIM Acetyltransf_3 RsuA Neighborhood of RT #9 [1563118, 1570892] PRK09776 PRK10060 Alpha_ANH_like_IV RVT-GII GIIM SPFH_like_u1 Feature: gene Location: 3630-4559 bp Feature: gene Location: 4821-6395 bp Feature: gene Location: 6875-8272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7205-7823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 05-782 3 bp Feature: domain Description: GIIM Note: maturase Location: 7874-8099 bp Feature: domain Description: GIIM Note: maturase Location: 7874-8099 bp Feature: gene Location: 8511-9104 bp Feature: domain Description: YcfA Location: 8514-8604 bp Feature: domain Description: YcfA Location: 8514-8604 bp Feature: domain Description: HicB_lk_antitox Location: 8712-9069 bp Feature: domain Description: HicB_lk_antitox Location: 8712 -9069 bp Feature: gene Location: 9313-10896 bp Feature: domain Description: PEP_TPR_lipo Location: 9358-9640 bp Feature: domain Description: PEP_TPR_lipo Location: 9358-9640 bp Feature: domain Description: TPR Location: 9649-10036 bp Feature: domain Description: TPR Location: 9649-10036 bp Feature: domain Description: Sulfotransfer_3 Location: 10174-10735 bp Feature: domain Description: Sulfotransfer_3 Location: 10174-10735 bp Feature: gene Location: 53975-55666 bp Feature: domain Description: COG5421 Location: 54566-55475 bp Feature: domain Description: COG542 1 Location: 54566-55475 bp Feature: gene Location: 55765-56046 bp Feature: domain Description: COG5606 Location: 55771-56029 bp Feature: domain Description: COG5606 Location: 55771-5602 9 bp Feature: gene Location: 56802-58271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57045-57669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57045-57669 bp Feature: domain Description: GIIM Note: maturase Location: 57717-57834 bp Feature: domain Description: GIIM Note: maturase Location: 57717-57834 bp Feature: gene Location: 58274-59068 bp Feature: domain Description: ExeA Location: 58277-59042 bp Feature: domain Description: ExeA Location: 582 77-59042 bp Feature: gene Location: 59070-60422 bp Feature: domain Description: HTH_32 Location: 59235-59463 bp Feature: domain Description: HTH_32 Location: 592 35-59463 bp Feature: domain Description: rve Location: 59544-59886 bp Feature: domain Description: rve Location: 59544-59886 bp Feature: gene Location: 63621-64652 bp Feature: domain Description: Gmd Location: 63624-64635 bp Feature: domain Description: Gmd Location: 6362 4-64635 bp Feature: gene Location: 64636-65541 bp Feature: domain Description: WcaG Location: 64666-65530 bp Feature: domain Description: WcaG Location: 64666-65530 bp Feature: gene Location: 66266-67486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66509-67133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66509-67133 bp Feature: domain Description: GIIM Note: maturase Location: 67181-67361 bp Feature: domain Description: GIIM Note: maturase Location: 67181-67361 bp Feature: gene Location: 67615-67761 bp Feature: gene Location: 67783-69432 bp Feature: domain Description: PotE Location: 67807-69262 bp Feature: domain Description: PotE Location: 67807-692 62 bp Feature: gene Location: 148315-149919 bp Feature: domain Description: COG4584 Location: 148378-148501 bp Feature: domain Description: COG4584 Location: 148378-148501 bp Feature: domain Description: rve Location: 148735-149110 bp Feature: domain Description: rve Location: 148735-149110 bp Feature: domain Description: COG4584 Location: 149311-149764 bp Feature: domain Description: COG4584 Location: 149311-149764 bp Feature: gene Location: 150025-151359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150334-150997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150334-150997 bp Feature: domain Description: GIIM Note: maturase Location: 151066-151279 bp Feature: domain Description: GIIM Note: maturase Location: 151066-1512 79 bp Feature: gene Location: 1379208-1380653 bp Feature: domain Description: cysS Location: 1379211-1380642 bp Feature: domain Description: cysS Location: 13792 11-1380642 bp Feature: gene Location: 1380650-1381102 bp Feature: domain Description: SufE Location: 1380686-1381088 bp Feature: domain Description: SufE Location: 1380686-1381088 bp Feature: gene Location: 1381403-1382623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1381646-1382270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1381646-1382 2 70 bp Feature: domain Description: GIIM Note: maturase Location: 1382318-1382501 bp Feature: domain Description: GIIM Note: maturase Location: 1382 318-1382 501 bp Feature: gene Location: 1383194-1385278 bp Feature: domain Description: PEP_TPR_lipo Location: 1384565-1384748 bp Feature: domain Description: PEP_TPR_lipo Location: 1384565-1384748 bp Feature: domain Description: PEP_TPR_lipo Location: 1384919-1385126 bp Feature: domain Description: PEP_TPR_lipo Location: 1384919-138512 6 bp Feature: gene Location: 1385536-1387590 bp Feature: domain Description: DAP2 Location: 1385632-1387585 bp Feature: domain Description: DAP2 Location: 1385632 -1387585 bp Feature: gene Location: 1409525-1409929 bp Feature: domain Description: GIY-YIG_unchar_3 Location: 1409606-1409861 bp Feature: domain Description: GIY-YIG_unchar_3 Location: 1409606-1409861 bp Feature: gene Location: 1410685-1411944 bp Feature: domain Description: IS285 Location: 1410760-1411927 bp Feature: domain Description: IS2 85 Location: 1410760-141192 7 bp Feature: gene Location: 1411947-1413068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412091-1412715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412 091-1412 715 bp Feature: domain Description: GIIM Note: maturase Location: 1412763-1412946 bp Feature: domain Description: GIIM Note: maturase Location: 1412 763-1412 946 bp Feature: gene Location: 1413415-1414614 bp Feature: domain Description: GT4_WbuB-like Location: 1413445-1414588 bp Feature: domain Description: GT4_WbuB-like Location: 1413445-1414588 bp Feature: gene Location: 1414809-1415036 bp Feature: gene Location: 1437799-1438218 bp Feature: domain Description: NT_KNTase_like Location: 1437841-1438063 bp Feature: domain Description: NT_KNTase_like Location: 1437841-1438063 bp Feature: gene Location: 1438221-1438520 bp Feature: domain Description: NT_KNTase_like Location: 1438242-1438479 bp Feature: domain Description: NT_KNTase_like Location: 14382 42 -1438479 bp Feature: gene Location: 1438710-1439930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1438953-1439577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1438953-1439577 bp Feature: domain Description: GIIM Note: maturase Location: 1439625-1439808 bp Feature: domain Description: GIIM Note: maturase Location: 143962 5-1439808 bp Feature: gene Location: 1440793-1441110 bp Feature: domain Description: NT_KNTase_like Location: 1440814-1441093 bp Feature: domain Description: NT_KNTase_like Location: 1440814-1441093 bp Feature: gene Location: 1441115-1441603 bp Feature: gene Location: 1464768-1466933 bp Feature: domain Description: Peptidase_S46 Location: 1464924-1466916 bp Feature: domain Description: Peptidase_S46 Location: 146492 4-1466916 bp Feature: gene Location: 1466993-1467460 bp Feature: gene Location: 1467686-1468906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1467929-1468553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146792 9-1468553 bp Feature: domain Description: GIIM Note: maturase Location: 1468601-1468784 bp Feature: domain Description: GIIM Note: maturase Location: 1468601-1468784 bp Feature: gene Location: 1469549-1470148 bp Feature: domain Description: Acetyltransf_3 Location: 1469600-1470014 bp Feature: domain Description: Acetyltransf_3 Location: 1469600-1470014 bp Feature: gene Location: 1470145-1470894 bp Feature: domain Description: RsuA Location: 1470151-1470838 bp Feature: domain Description: RsuA Location: 1470151-1470838 bp Feature: gene Location: 1563118-1565898 bp Feature: domain Description: PRK09776 Location: 1563742-1564003 bp Feature: domain Description: PRK09776 Location: 1563742 -1564003 bp Feature: domain Description: PRK10060 Location: 1564063-1565845 bp Feature: domain Description: PRK10060 Location: 1564063-1565845 bp Feature: gene Location: 1566056-1567165 bp Feature: domain Description: Alpha_ANH_like_IV Location: 1566491-1567070 bp Feature: domain Description: Alpha_ANH_like_IV Location: 1566491-1567070 bp Feature: gene Location: 1567345-1568565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567588-1568212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567588-15682 12 bp Feature: domain Description: GIIM Note: maturase Location: 1568260-1568443 bp Feature: domain Description: GIIM Note: maturase Location: 15682 60-1568443 bp Feature: gene Location: 1569360-1569929 bp Feature: gene Location: 1569993-1570892 bp Feature: domain Description: SPFH_like_u1 Location: 1570122-1570404 bp Feature: domain Description: SPFH_like_u1 Location: 157012 2 -1570404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YcfA (COG1724), HicB_lk_antitox (pfam15919), PEP_TPR_lipo (TIGR02917), TPR (smart00028), Sulfotransfer_3 (pfam13469), COG5421 (Transposase ), COG5606 (Predicted DNA-binding protein, XRE-type HTH domain ), ExeA (COG3267)
HTH_32 (pfam13565), rve (pfam00665), Gmd (COG1089), WcaG (COG0451), PotE (COG0531), COG4584 (Transposase ), cysS (TIGR00435), SufE (pfam02657), DAP2 (COG1506), GIY-YIG_unchar_3 (cd10448)
IS285 (COG3328), GT4_WbuB-like (cd03794), NT_KNTase_like (cd05403), Peptidase_S46 (pfam10459), Acetyltransf_3 (pfam13302), RsuA (COG1187), PRK09776 (putative diguanylate cyclase; Provisional), PRK10060 (cyclic di-GMP phosphodiesterase), Alpha_ANH_like_IV (cd01994), SPFH_like_u1 (cd03408)