myRT

myRT report for GCA_002078015.1_ASM207801v1

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Seq: LWBP01000255.1 Niastella populi strain CCTCC AB 208238 contig90, whole genome shotgun sequence (14812 bp)
Overview 1 RT 1: 11124-14065 bp Neighborhood of RT #1 [11124, 14812] RVT-GII GIIM Resolvase Recombinase Feature: gene Location: 11124-11435 bp Feature: gene Location: 11658-11999 bp Feature: gene Location: 11996-13228 bp Ori: OQP45420.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12200-12857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2200-1 2857 bp Feature: domain Description: GIIM Note: maturase Location: 12947-13139 bp Feature: domain Description: GIIM Note: maturase Location: 1 2947-1 31 39 bp Feature: gene Location: 13399-14812 bp Ori: OQP45421.1 Feature: domain Description: Resolvase Location: 13405-13732 bp Feature: domain Description: Resolvase Location: 1 3405-1 3732 bp Feature: domain Description: Recombinase Location: 13828-14065 bp Feature: domain Description: Recombinase Location: 1 3828-1 4065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508)

Seq: LWBP01000254.1 Niastella populi strain CCTCC AB 208238 contig9, whole genome shotgun sequence (316450 bp)
Overview 1 RT 1: 255290-262522 bp Neighborhood of RT #1 [255290, 262522] RVT-Retrons YddW HYR HYR Por_Secre_tail Feature: gene Location: 255290-255475 bp Feature: gene Location: 255478-257139 bp Feature: gene Location: 257600-259105 bp Ori: OQP45780.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 258143-258758 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 58143-2 58758 bp Feature: gene Location: 259225-261849 bp Ori: OQP45781.1 Feature: domain Description: YddW Location: 259255-260425 bp Feature: domain Description: YddW Location: 2 592 55-2 6042 5 bp Feature: domain Description: HYR Location: 260884-260941 bp Feature: domain Description: HYR Location: 2 60884-2 60941 bp Feature: domain Description: HYR Location: 261136-261253 bp Feature: domain Description: HYR Location: 2 61136-2 612 53 bp Feature: domain Description: Por_Secre_tail Location: 261622-261838 bp Feature: domain Description: Por_Secre_tail Location: 2 6162 2 -2 61838 bp Feature: gene Location: 262097-262522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YddW (COG1649), HYR (pfam02494), Por_Secre_tail (TIGR04183)

Seq: LWBP01000187.1 Niastella populi strain CCTCC AB 208238 contig29, whole genome shotgun sequence (114370 bp)
Overview 1 RT 1: 189-3851 bp 2 RT 2: 6189-11442 bp Neighborhood of RT #1 [189, 4006] FolA HTH_18 RVT-GII Aes Aes Aes YbjT Neighborhood of RT #2 [6189, 12338] TIG RVT-GII Beta-lactamase RpoE Feature: gene Location: 189-737 bp Ori: OQP58723.1 Feature: domain Description: FolA Location: 198-714 bp Feature: domain Description: FolA Location: 198-714 bp Feature: gene Location: 734-1522 bp Ori: OQP58724.1 Feature: domain Description: HTH_18 Location: 1232-1463 bp Feature: domain Description: HTH_18 Location: 123 2-1463 bp Feature: gene Location: 1620-1805 bp Ori: OQP58725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647-1764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647-1764 bp Feature: gene Location: 1955-2905 bp Ori: OQP58726.1 Feature: domain Description: Aes Location: 2201-2354 bp Feature: domain Description: Aes Location: 2201-23 54 bp Feature: domain Description: Aes Location: 2450-2666 bp Feature: domain Description: Aes Location: 2450-2666 bp Feature: domain Description: Aes Location: 2681-2891 bp Feature: domain Description: Aes Location: 2681-2891 bp Feature: gene Location: 3263-4006 bp Ori: OQP58727.1 Feature: domain Description: YbjT Location: 3266-3851 bp Feature: domain Description: YbjT Location: 3 266-3 851 bp Feature: gene Location: 6189-6563 bp Ori: OQP58729.1 Feature: domain Description: TIG Location: 6264-6468 bp Feature: domain Description: TIG Location: 6264-6468 bp Feature: gene Location: 6634-7671 bp Feature: gene Location: 8580-9311 bp Ori: OQP58731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8844-9246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8844-9246 bp Feature: gene Location: 9516-10898 bp Ori: OQP58732.1 Feature: domain Description: Beta-lactamase Location: 9957-10830 bp Feature: domain Description: Beta-lactamase Location: 9957-1083 0 bp Feature: gene Location: 10932-12338 bp Ori: OQP58733.1 Feature: domain Description: RpoE Location: 10953-11442 bp Feature: domain Description: RpoE Location: 10953 -11442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FolA (COG0262), HTH_18 (pfam12833), RVT-GII, Aes (COG0657), YbjT (COG0702), TIG, Beta-lactamase (pfam00144), RpoE (COG3343)