myRT

myRT report for GCA_002080105.1_ASM208010v1

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Seq: MKCU01000012.1 Klebsiella oxytoca strain DSM 29614 Scaffold_2, whole genome shotgun sequence (549600 bp)
Overview 1 RT 1: 356786-362503 bp Neighborhood of RT #1 [356786, 362508] DUF4156 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 356786-357139 bp Ori: OQR52599.1 Feature: domain Description: DUF4156 Location: 356855-357131 bp Feature: domain Description: DUF41 56 Location: 356855-3571 31 bp Feature: gene Location: 357397-357699 bp Feature: gene Location: 357765-359411 bp Ori: OQR52601.1 Feature: domain Description: RVT_N Location: 357816-358059 bp Feature: domain Description: RVT_N Location: 35781 6-358059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358104-358749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3581 04-358749 bp Feature: domain Description: GIIM Note: maturase Location: 358803-359034 bp Feature: domain Description: GIIM Note: maturase Location: 358803-359034 bp Feature: domain Description: HNHc Note: nucleases Location: 359247-359406 bp Feature: domain Description: HNHc Note: nucleases Location: 359247-359406 bp Feature: gene Location: 360525-362171 bp Ori: OQR52602.1 Feature: domain Description: groEL Location: 360531-362157 bp Feature: domain Description: groEL Location: 360531 -3621 57 bp Feature: gene Location: 362215-362508 bp Ori: OQR52603.1 Gene: groES Feature: domain Description: groES Location: 362218-362503 bp Feature: domain Description: groES Location: 36221 8-362503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: MKCU01000061.1 Klebsiella oxytoca strain DSM 29614 Scaffold_8, whole genome shotgun sequence (94367 bp)
Overview 1 RT 1: 6972-12325 bp Neighborhood of RT #1 [6972, 12462] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 6972-8243 bp Ori: OQR47364.1 Feature: domain Description: umuC Location: 6975-8235 bp Feature: domain Description: umuC Location: 6975-82 35 bp Feature: gene Location: 8243-8674 bp Ori: OQR47365.1 Feature: domain Description: PRK10276 Location: 8294-8657 bp Feature: domain Description: PRK102 76 Location: 82 94-8657 bp Feature: gene Location: 9084-10568 bp Ori: OQR47366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9486-10176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9486-10176 bp Feature: gene Location: 10817-11788 bp Ori: OQR47367.1 Feature: domain Description: StbA Location: 10820-11765 bp Feature: domain Description: StbA Location: 1082 0-11765 bp Feature: gene Location: 11791-12462 bp Ori: OQR47368.1 Feature: domain Description: Plasmid_stab_B Location: 11806-12013 bp Feature: domain Description: Plasmid_stab_B Location: 11806-12 013 bp Feature: domain Description: Plasmid_stab_B Location: 12118-12325 bp Feature: domain Description: Plasmid_stab_B Location: 12 118-12 32 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: MKCU01000033.1 Klebsiella oxytoca strain DSM 29614 Scaffold_39, whole genome shotgun sequence (4835 bp)
Overview 1 RT 1: 50-3310 bp Neighborhood of RT #1 [50, 3381] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 50-649 bp Ori: OQR47606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-626 bp Feature: gene Location: 1381-2958 bp Ori: OQR47611.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1534-1741 bp Feature: domain Description: LZ_Tnp_IS66 Location: 153 4-1741 bp Feature: domain Description: zf-IS66 Location: 1771-1897 bp Feature: domain Description: zf-IS66 Location: 1771-1897 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1942-2794 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1942-2794 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2815-2923 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2815-2923 bp Feature: gene Location: 3001-3381 bp Ori: OQR47607.1 Feature: domain Description: TnpB_IS66 Location: 3019-3310 bp Feature: domain Description: TnpB_IS66 Location: 3 019-3 3 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: MKCU01000060.1 Klebsiella oxytoca strain DSM 29614 Scaffold_7, whole genome shotgun sequence (6453 bp)
Overview 1 RT 1: 1095-3758 bp Neighborhood of RT #1 [1095, 3790] DDE_Tnp_IS66 RVT-GII GIIM InsE TnpB_IS66 Feature: gene Location: 1095-1469 bp Feature: gene Location: 1634-2029 bp Ori: OQR47442.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1637-1943 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1637-194 3 bp Feature: gene Location: 2105-2890 bp Ori: OQR47443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2108-2516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2108-2516 bp Feature: domain Description: GIIM Note: maturase Location: 2582-2792 bp Feature: domain Description: GIIM Note: maturase Location: 2582-2792 bp Feature: gene Location: 3039-3443 bp Ori: OQR47444.1 Feature: domain Description: InsE Location: 3060-3423 bp Feature: domain Description: InsE Location: 3060-34 23 bp Feature: gene Location: 3440-3790 bp Ori: OQR47445.1 Feature: domain Description: TnpB_IS66 Location: 3467-3758 bp Feature: domain Description: TnpB_IS66 Location: 34 67-3758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), InsE (COG2963), TnpB_IS66 (pfam05717)