myRT

myRT report for GCA_002082275.2_ASM208227v2

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Seq: NBTD02000001.1 Yersinia enterocolitica strain FDAARGOS_226 scf7180000000004_quiver_pilon, whole genome shotgun sequence (4528896 bp)
Overview 1 RT 1: 2451273-2458716 bp 2 RT 2: 2652360-2659607 bp Neighborhood of RT #1 [2451273, 2458730] Couple_hipA HipA_C VapI RVT-UG8 RVT-UG3 INT_Rci_Hp1_C PRK03624 Neighborhood of RT #2 [2652360, 2659607] SmpB PRK09692 RVT-UG8 RVT-UG3 PRK09678 Feature: gene Location: 2451273-2452580 bp Ori: PNM19451.1 Feature: domain Description: Couple_hipA Location: 2451294-2451624 bp Feature: domain Description: Couple_hipA Location: 2451 294-2451 624 bp Feature: domain Description: HipA_C Location: 2451777-2452497 bp Feature: domain Description: HipA_C Location: 2451 777-2452497 bp Feature: gene Location: 2452813-2452992 bp Ori: PNM19452.1 Feature: domain Description: VapI Location: 2452831-2452966 bp Feature: domain Description: VapI Location: 2452831 -2452966 bp Feature: gene Location: 2453472-2455478 bp Ori: PNM19453.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2453970-2454417 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2453970-245441 7 bp Feature: gene Location: 2455483-2456702 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2455771-2456242 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2455771 -2456242 bp Feature: gene Location: 2456929-2458047 bp Ori: PNM19454.1 Feature: domain Description: INT_Rci_Hp1_C Location: 2457493-2458012 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 2457493-245801 2 bp Feature: gene Location: 2458305-2458730 bp Ori: PNM19455.1 Feature: domain Description: PRK03624 Location: 2458308-2458716 bp Feature: domain Description: PRK03624 Location: 2458308-245871 6 bp Feature: gene Location: 2652360-2652842 bp Ori: PNM21278.1 Gene: smpB Feature: domain Description: SmpB Location: 2652390-2652837 bp Feature: domain Description: SmpB Location: 2652390-2652837 bp Feature: gene Location: 2653467-2654660 bp Ori: PNM19608.1 Feature: domain Description: PRK09692 Location: 2653470-2654649 bp Feature: domain Description: PRK09692 Location: 2653470-2654649 bp Feature: gene Location: 2654862-2656835 bp Ori: PNM19609.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2655396-2655843 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2655396-2655843 bp Feature: gene Location: 2656828-2658084 bp Ori: PNM19610.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2657113-2657608 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 26571 1 3-2657608 bp Feature: gene Location: 2658658-2658903 bp Ori: PNM19611.1 Feature: domain Description: PRK09678 Location: 2658661-2658817 bp Feature: domain Description: PRK09678 Location: 2658661 -265881 7 bp Feature: gene Location: 2658906-2659607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), VapI (COG3093), RVT-UG8, RVT-UG3, INT_Rci_Hp1_C (cd00796), PRK03624 (putative acetyltransferase; Provisional), SmpB (pfam01668), PRK09692 (Integrase; provisional), PRK09678 (DNA-binding transcriptional regulator; Provisional)