myRT

myRT report for GCA_002082355.1_ASM208235v1

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Seq: MUJJ01000002.1 Pantoea vagans strain Pa NODE_2_length_705319_cov_39.3032_ID_1327, whole genome shotgun sequence (705319 bp)
Overview 1 RT 1: 687556-692960 bp 2 RT 2: 697229-704593 bp Neighborhood of RT #1 [687556, 692960] SmpB RVT-Retrons Neighborhood of RT #2 [697229, 704607] RVT-UG1 RNAse_A_bac CdiI_2 Feature: gene Location: 687556-688038 bp Ori: OQV42103.1 Feature: domain Description: SmpB Location: 687586-688033 bp Feature: domain Description: SmpB Location: 687586-688033 bp Feature: gene Location: 688624-689764 bp Feature: gene Location: 690080-691303 bp Ori: OQV42104.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 690236-690842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 690236-690842 bp Feature: gene Location: 691305-692039 bp Feature: gene Location: 692299-692960 bp Feature: gene Location: 697229-698058 bp Feature: gene Location: 698342-698776 bp Feature: gene Location: 698785-702498 bp Ori: OQV42108.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 699397-699886 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 699397-699886 bp Feature: gene Location: 703482-704303 bp Ori: OQV42109.1 Feature: domain Description: RNAse_A_bac Location: 703959-704295 bp Feature: domain Description: RNAse_A_bac Location: 703959-704295 bp Feature: gene Location: 704305-704607 bp Ori: OQV42110.1 Feature: domain Description: CdiI_2 Location: 704335-704593 bp Feature: domain Description: CdiI_2 Location: 704335-704593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-Retrons, RVT-UG1, RNAse_A_bac (pfam18431), CdiI_2 (pfam18593)

Seq: MUJJ01000015.1 Pantoea vagans strain Pa NODE_15_length_10784_cov_3.44834_ID_1353, whole genome shotgun sequence (10784 bp)
Overview 1 RT 1: 5063-9237 bp Neighborhood of RT #1 [5063, 9245] arc_metj RVT-GII GIIM Doc doc_partner Feature: gene Location: 5063-5632 bp Ori: OQV37950.1 Feature: domain Description: arc_metj Location: 5510-5627 bp Feature: domain Description: arc_metj Location: 5510-562 7 bp Feature: gene Location: 5985-6569 bp Feature: gene Location: 7167-8441 bp Ori: OQV37952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7368-7983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7368-7983 bp Feature: domain Description: GIIM Note: maturase Location: 8043-8250 bp Feature: domain Description: GIIM Note: maturase Location: 8043-82 50 bp Feature: gene Location: 8522-8923 bp Ori: OQV37953.1 Feature: domain Description: Doc Location: 8537-8909 bp Feature: domain Description: Doc Location: 8537-8909 bp Feature: gene Location: 8961-9245 bp Ori: OQV37954.1 Feature: domain Description: doc_partner Location: 9006-9237 bp Feature: domain Description: doc_partner Location: 9006-92 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-GII, GIIM (pfam08388), Doc (COG3654), doc_partner (TIGR02609)