myRT

myRT report for GCA_002083875.1_ASM208387v1

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Seq: MTEJ01000017.1 Thiothrix lacustris isolate A8 Ga0073116_1017, whole genome shotgun sequence (38843 bp)
Overview 1 RT 1: 35753-38812 bp Neighborhood of RT #1 [35753, 38812] Cas2_I_II_III Cas_Cas1 RVT-CRISPR DUF820 Feature: gene Location: 35753-36088 bp Ori: OQX15248.1 Feature: domain Description: Cas2_I_II_III Location: 35771-35963 bp Feature: domain Description: Cas2_I_II_III Location: 35771 -35963 bp Feature: gene Location: 36098-37090 bp Ori: OQX15249.1 Feature: domain Description: Cas_Cas1 Location: 36107-36956 bp Feature: domain Description: Cas_Cas1 Location: 361 07-36956 bp Feature: gene Location: 37098-37928 bp Ori: OQX15250.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 37305-37905 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 37305-37905 bp Feature: gene Location: 37973-38575 bp Ori: OQX15251.1 Feature: domain Description: DUF820 Location: 38057-38507 bp Feature: domain Description: DUF820 Location: 38057-38507 bp Feature: gene Location: 38579-38812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, DUF820

Seq: MTEJ01000205.1 Thiothrix lacustris isolate A8 Ga0073116_1205, whole genome shotgun sequence (11157 bp)
Overview 1 RT 1: 5525-9901 bp Neighborhood of RT #1 [5525, 9915] YfmG COG5635 COG5635 YfmG RVT-DGRs PhdYeFM_antitox COG1569 Feature: gene Location: 5525-5623 bp Feature: domain Description: YfmG Location: 5528-5624 bp Feature: domain Description: YfmG Location: 552 8-562 4 bp Feature: gene Location: 5836-8652 bp Ori: OQX07588.1 Feature: domain Description: COG5635 Location: 6169-7009 bp Feature: domain Description: COG5635 Location: 6169-7009 bp Feature: domain Description: COG5635 Location: 7279-7456 bp Feature: domain Description: COG5635 Location: 72 79-7456 bp Feature: domain Description: YfmG Location: 7798-8641 bp Feature: domain Description: YfmG Location: 7798-8641 bp Feature: gene Location: 8813-9187 bp Ori: OQX07589.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9026-9182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 902 6-9182 bp Feature: gene Location: 9255-9506 bp Ori: OQX07590.1 Feature: domain Description: PhdYeFM_antitox Location: 9258-9447 bp Feature: domain Description: PhdYeFM_antitox Location: 92 58-9447 bp Feature: gene Location: 9496-9915 bp Ori: OQX07591.1 Feature: domain Description: COG1569 Location: 9511-9901 bp Feature: domain Description: COG1569 Location: 9511-9901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), COG5635 (Predicted NTPase, NACHT family domain ), RVT-DGRs, PhdYeFM_antitox (pfam02604), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain )

Seq: MTEJ01000297.1 Thiothrix lacustris isolate A8 Ga0073116_1297, whole genome shotgun sequence (8343 bp)
Overview 1 RT 1: 2751-6979 bp Neighborhood of RT #1 [2751, 6987] DUF820 YfmG RVT-DGRs Hrd TIR_2 tolA pfam03781 Feature: gene Location: 2751-3302 bp Ori: OQX05255.1 Feature: domain Description: DUF820 Location: 2796-3276 bp Feature: domain Description: DUF820 Location: 2796-3 276 bp Feature: gene Location: 3440-3547 bp Feature: domain Description: YfmG Location: 3443-3548 bp Feature: domain Description: YfmG Location: 3 443 -3 548 bp Feature: gene Location: 3578-4585 bp Ori: OQX05256.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3788-4379 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 788-43 79 bp Feature: gene Location: 4557-5174 bp Ori: OQX05257.1 Feature: domain Description: Hrd Location: 4938-5142 bp Feature: domain Description: Hrd Location: 493 8-5142 bp Feature: gene Location: 5236-6987 bp Ori: OQX05258.1 Feature: domain Description: TIR_2 Location: 5248-5563 bp Feature: domain Description: TIR_2 Location: 5248-5563 bp Feature: domain Description: tolA Location: 5626-6196 bp Feature: domain Description: tolA Location: 5626-6196 bp Feature: domain Description: pfam03781 Location: 6283-6979 bp Feature: domain Description: pfam03 781 Location: 6283 -6979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd), TIR_2 (pfam13676), tolA (PRK09510), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: MTEJ01000302.1 Thiothrix lacustris isolate A8 Ga0073116_1302, whole genome shotgun sequence (8237 bp)
Overview 1 RT 1: 1-1945 bp Neighborhood of RT #1 [1, 2067] RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 1-699 bp Ori: OQX05168.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 202-700 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 202-700 bp Feature: gene Location: 713-1714 bp Ori: OQX05169.1 Feature: domain Description: Cas_Cas1 Location: 722-1571 bp Feature: domain Description: Cas_Cas1 Location: 722-1571 bp Feature: gene Location: 1735-2067 bp Ori: OQX05170.1 Feature: domain Description: Cas2_I_II_III Location: 1753-1945 bp Feature: domain Description: Cas2_I_II_III Location: 1753-194 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)

Seq: MTEJ01000247.1 Thiothrix lacustris isolate A8 Ga0073116_1247, whole genome shotgun sequence (9913 bp)
Overview 1 RT 1: 825-6169 bp Neighborhood of RT #1 [825, 6330] YfmG YfmG RVT-DGRs RVT-DGRs Hrd YfmG Feature: gene Location: 825-1640 bp Ori: OQX06385.1 Feature: domain Description: YfmG Location: 951-1626 bp Feature: domain Description: YfmG Location: 95 1-1626 bp Feature: gene Location: 1686-1955 bp Ori: OQX06386.1 Feature: domain Description: YfmG Location: 1710-1836 bp Feature: domain Description: YfmG Location: 1710-1836 bp Feature: gene Location: 1952-2503 bp Ori: OQX06387.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1985-2297 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1985 -2297 bp Feature: gene Location: 2510-2959 bp Ori: OQX06388.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2717-2954 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2717-295 4 bp Feature: gene Location: 2934-3299 bp Ori: OQX06389.1 Feature: domain Description: Hrd Location: 3060-3261 bp Feature: domain Description: Hrd Location: 3060-3261 bp Feature: gene Location: 3427-6330 bp Ori: OQX06390.1 Feature: domain Description: YfmG Location: 5479-6169 bp Feature: domain Description: YfmG Location: 5 479-6169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: MTEJ01000068.1 Thiothrix lacustris isolate A8 Ga0073116_1068, whole genome shotgun sequence (32195 bp)
Overview 1 RT 1: 16463-20360 bp Neighborhood of RT #1 [16463, 20371] DUF820 YfmG RVT-DGRs Hrd TIR_2 YfmG Feature: gene Location: 16463-17038 bp Ori: OQX12330.1 Feature: domain Description: DUF820 Location: 16532-17006 bp Feature: domain Description: DUF820 Location: 16 532-17006 bp Feature: gene Location: 17022-17276 bp Ori: OQX12331.1 Feature: domain Description: YfmG Location: 17025-17133 bp Feature: domain Description: YfmG Location: 17025-17133 bp Feature: gene Location: 17307-18314 bp Ori: OQX12332.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17517-18105 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17517-18105 bp Feature: gene Location: 18286-18801 bp Ori: OQX12333.1 Feature: domain Description: Hrd Location: 18535-18733 bp Feature: domain Description: Hrd Location: 18535-18733 bp Feature: gene Location: 19001-20371 bp Ori: OQX12334.1 Feature: domain Description: TIR_2 Location: 19013-19328 bp Feature: domain Description: TIR_2 Location: 19013-19328 bp Feature: domain Description: YfmG Location: 19625-20360 bp Feature: domain Description: YfmG Location: 196 25-2036 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd), TIR_2 (pfam13676)

Seq: MTEJ01000489.1 Thiothrix lacustris isolate A8 Ga0073116_1489, whole genome shotgun sequence (5391 bp)
Overview 1 RT 1: 477-4641 bp Neighborhood of RT #1 [477, 4670] Cas6_III CRISPR_Cas6 PRK13735 V RVT-CRISPR Feature: gene Location: 477-1439 bp Ori: OQX02409.1 Feature: domain Description: Cas6_III Location: 537-879 bp Feature: domain Description: Cas6_III Location: 537 -87 9 bp Feature: domain Description: CRISPR_Cas6 Location: 1035-1404 bp Feature: domain Description: CRISPR_Cas6 Location: 1035-1404 bp Feature: gene Location: 1527-4169 bp Ori: OQX02410.1 Feature: domain Description: PRK13735 Location: 1602-2754 bp Feature: domain Description: PRK137 35 Location: 1602-27 54 bp Feature: domain Description: V Location: 3801-4125 bp Feature: domain Description: V Location: 3801-4125 bp Feature: gene Location: 4374-4670 bp Ori: OQX02411.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4386-4641 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4386-4641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6_III (cd09760), CRISPR_Cas6 (pfam10040), PRK13735 (conjugal transfer mating pair stabilization protein TraG; Provisional), V (PHA02564), RVT-CRISPR

Seq: MTEJ01000437.1 Thiothrix lacustris isolate A8 Ga0073116_1437, whole genome shotgun sequence (5925 bp)
Overview 1 RT 1: 200-5597 bp Neighborhood of RT #1 [200, 5617] YfmG COG5635 YfmG RVT-DGRs Avd_like PRK10860 Feature: gene Location: 200-430 bp Ori: OQX03011.1 Feature: domain Description: YfmG Location: 290-419 bp Feature: domain Description: YfmG Location: 290-419 bp Feature: gene Location: 637-3516 bp Ori: OQX03012.1 Feature: domain Description: COG5635 Location: 1111-2308 bp Feature: domain Description: COG5635 Location: 1111-2308 bp Feature: domain Description: YfmG Location: 2650-3502 bp Feature: domain Description: YfmG Location: 2650-3502 bp Feature: gene Location: 3675-4769 bp Ori: OQX03013.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3888-4533 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38 8 8 -4533 bp Feature: gene Location: 4766-5098 bp Ori: OQX03014.1 Feature: domain Description: Avd_like Location: 4787-5093 bp Feature: domain Description: Avd_like Location: 478 7-5093 bp Feature: gene Location: 5111-5617 bp Ori: OQX03015.1 Feature: domain Description: PRK10860 Location: 5126-5597 bp Feature: domain Description: PRK108 60 Location: 5126-5597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), COG5635 (Predicted NTPase, NACHT family domain ), RVT-DGRs, Avd_like (cd16376), PRK10860 (tRNA-specific adenosine deaminase; Provisional)

Seq: MTEJ01000149.1 Thiothrix lacustris isolate A8 Ga0073116_1149, whole genome shotgun sequence (13776 bp)
Overview 1 RT 1: 4409-9911 bp Neighborhood of RT #1 [4409, 9991] YfmG Hrd RVT-DGRs YfmG YfmG Feature: gene Location: 4409-7267 bp Ori: OQX09233.1 Feature: domain Description: YfmG Location: 6371-7085 bp Feature: domain Description: YfmG Location: 6371-7085 bp Feature: gene Location: 7264-7770 bp Ori: OQX09234.1 Feature: domain Description: Hrd Location: 7528-7723 bp Feature: domain Description: Hrd Location: 7528-7723 bp Feature: gene Location: 7745-8752 bp Ori: OQX09235.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7952-8546 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79 52-8546 bp Feature: gene Location: 8707-8967 bp Ori: OQX09236.1 Feature: domain Description: YfmG Location: 8767-8899 bp Feature: domain Description: YfmG Location: 8767-889 9 bp Feature: gene Location: 9047-9991 bp Ori: OQX09239.1 Feature: domain Description: YfmG Location: 9179-9911 bp Feature: domain Description: YfmG Location: 9 179 -9 9 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs

Seq: MTEJ01000504.1 Thiothrix lacustris isolate A8 Ga0073116_1504, whole genome shotgun sequence (7347 bp)
Overview 1 RT 1: 59-6898 bp Neighborhood of RT #1 [59, 7041] WGR_DNA_ligase RVT-Retrons COG1373 HTH_XRE Feature: gene Location: 59-3328 bp Ori: OQX02268.1 Feature: domain Description: WGR_DNA_ligase Location: 77-293 bp Feature: domain Description: WGR_DNA_ligase Location: 77-293 bp Feature: gene Location: 3325-4983 bp Ori: OQX02269.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3862-4471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3862-4471 bp Feature: gene Location: 5367-6605 bp Ori: OQX02270.1 Feature: domain Description: COG1373 Location: 5379-6594 bp Feature: domain Description: COG1373 Location: 5379-6594 bp Feature: gene Location: 6685-7041 bp Ori: OQX02271.1 Feature: domain Description: HTH_XRE Location: 6715-6898 bp Feature: domain Description: HTH_XRE Location: 6715-6898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons, COG1373 (Predicted ATPase, AAA+ superfamily ), HTH_XRE (smart00530)