myRT

myRT report for GCA_002086915.1_ASM208691v1

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Seq: MWQA01000025.1 Mycobacterium persicum strain 12MK Contig_m3_144_len:18658, whole genome shotgun sequence (18658 bp)
Overview 1 RT 1: 13616-18530 bp Neighborhood of RT #1 [13616, 18538] PRK06526 RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 13616-14062 bp Feature: gene Location: 14085-14558 bp Feature: domain Description: PRK06526 Location: 14109-14547 bp Feature: domain Description: PRK06526 Location: 1 41 09-1 4547 bp Feature: gene Location: 14736-15026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14745-14847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4745-1 4847 bp Feature: domain Description: GIIM Note: maturase Location: 14916-15027 bp Feature: domain Description: GIIM Note: maturase Location: 1 491 6-1 5027 bp Feature: gene Location: 15140-15349 bp Feature: gene Location: 17156-18538 bp Ori: ORB98753.1 Feature: domain Description: DDE_Tnp_1_4 Location: 17171-18530 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 71 71 -1 8530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)

Seq: MWQA01000001.1 Mycobacterium persicum strain 12MK PseudoContig_CP009483.1, whole genome shotgun sequence (6254980 bp)
Overview 1 RT 1: 321065-326325 bp 2 RT 2: 989499-996497 bp 3 RT 3: 1179843-1186494 bp 4 RT 4: 2528209-2534953 bp 5 RT 5: 5299499-5310573 bp Neighborhood of RT #1 [321065, 326339] HTH_32 RVT-GII DDE_3 DDE_3 COG5651 Neighborhood of RT #2 [989499, 996565] UgpE PBP2_TMBP_like RVT-GII GIIM USPA USPA 2A0306 Neighborhood of RT #3 [1179843, 1186496] rpsB NlpD RVT-GII GIIM Methyltransf_25 COG3552 Neighborhood of RT #4 [2528209, 2534982] STKc_PknB_like Kelch Kelch Kelch Kelch_1 Kelch RVT-GII GIIM T7SS_ESX_EspC Neighborhood of RT #5 [5299499, 5310578] PRK03381 SSL2 RVT-GII GIIM Germane Gmad2 LanM-like Feature: gene Location: 321065-321718 bp Feature: gene Location: 321897-322187 bp Feature: domain Description: HTH_32 Location: 321924-322149 bp Feature: domain Description: HTH_32 Location: 32 192 4-32 2 149 bp Feature: gene Location: 323023-323516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323197-323374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 3197-32 3374 bp Feature: gene Location: 323639-324229 bp Feature: domain Description: DDE_3 Location: 323648-323876 bp Feature: domain Description: DDE_3 Location: 32 3648-32 3876 bp Feature: domain Description: DDE_3 Location: 323966-324086 bp Feature: domain Description: DDE_3 Location: 32 3966-32 4086 bp Feature: gene Location: 325101-326339 bp Ori: ORC05554.1 Feature: domain Description: COG5651 Location: 325113-326325 bp Feature: domain Description: COG5651 Location: 32 5113-32 632 5 bp Feature: gene Location: 989499-990320 bp Ori: ORC06021.1 Feature: domain Description: UgpE Location: 989514-990318 bp Feature: domain Description: UgpE Location: 989514-990318 bp Feature: gene Location: 990400-991728 bp Ori: ORC06022.1 Feature: domain Description: PBP2_TMBP_like Location: 990529-991699 bp Feature: domain Description: PBP2 _TMBP_like Location: 99052 9-991699 bp Feature: gene Location: 992090-993352 bp Ori: ORC06023.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992306-992966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 306-992 966 bp Feature: domain Description: GIIM Note: maturase Location: 993050-993278 bp Feature: domain Description: GIIM Note: maturase Location: 993050-9932 78 bp Feature: gene Location: 994227-995099 bp Ori: ORC06024.1 Feature: domain Description: USPA Location: 994236-994638 bp Feature: domain Description: USPA Location: 9942 36-994638 bp Feature: domain Description: USPA Location: 994683-995094 bp Feature: domain Description: USPA Location: 994683-995094 bp Feature: gene Location: 995096-996565 bp Ori: ORC06025.1 Feature: domain Description: 2A0306 Location: 995189-996497 bp Feature: domain Description: 2 A0306 Location: 995189-996497 bp Feature: gene Location: 1179843-1180697 bp Ori: ORC06149.1 Feature: domain Description: rpsB Location: 1179846-1180533 bp Feature: domain Description: rpsB Location: 1179846-1180533 bp Feature: gene Location: 1180979-1181470 bp Ori: ORC06150.1 Feature: domain Description: NlpD Location: 1181045-1181384 bp Feature: domain Description: NlpD Location: 1181045-1181384 bp Feature: gene Location: 1181891-1183153 bp Ori: ORC06151.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1182107-1182767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1182 107-1182 767 bp Feature: domain Description: GIIM Note: maturase Location: 1182851-1183079 bp Feature: domain Description: GIIM Note: maturase Location: 1182 851-1183079 bp Feature: gene Location: 1184058-1185050 bp Ori: ORC06152.1 Feature: domain Description: Methyltransf_25 Location: 1184454-1184742 bp Feature: domain Description: Methyltransf_2 5 Location: 1184454-1184742 bp Feature: gene Location: 1185057-1186496 bp Ori: ORC06153.1 Feature: domain Description: COG3552 Location: 1185060-1186494 bp Feature: domain Description: COG3552 Location: 1185060-1186494 bp Feature: gene Location: 2528209-2529321 bp Feature: domain Description: STKc_PknB_like Location: 2528287-2529058 bp Feature: domain Description: STKc_PknB_like Location: 2 52 82 87-2 52 9058 bp Feature: gene Location: 2529444-2531456 bp Ori: ORC07144.1 Feature: domain Description: Kelch Location: 2529729-2530041 bp Feature: domain Description: Kelch Location: 2 52 972 9-2 530041 bp Feature: domain Description: Kelch Location: 2530053-2530464 bp Feature: domain Description: Kelch Location: 2 530053-2 530464 bp Feature: domain Description: Kelch Location: 2530473-2530857 bp Feature: domain Description: Kelch Location: 2 530473-2 530857 bp Feature: domain Description: Kelch_1 Location: 2530920-2531049 bp Feature: domain Description: Kelch_1 Location: 2 53092 0-2 531049 bp Feature: domain Description: Kelch Location: 2531058-2531448 bp Feature: domain Description: Kelch Location: 2 531058-2 531448 bp Feature: gene Location: 2531859-2533121 bp Ori: ORC07145.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532075-2532735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 532 075-2 532 735 bp Feature: domain Description: GIIM Note: maturase Location: 2532819-2533047 bp Feature: domain Description: GIIM Note: maturase Location: 2 532 819-2 533047 bp Feature: gene Location: 2533963-2534592 bp Feature: gene Location: 2534665-2534982 bp Ori: ORC07147.1 Feature: domain Description: T7SS_ESX_EspC Location: 2534671-2534953 bp Feature: domain Description: T7SS_ESX_EspC Location: 2 534671-2 534953 bp Feature: gene Location: 5299499-5301946 bp Ori: ORC09217.1 Feature: domain Description: PRK03381 Location: 5299529-5301890 bp Feature: domain Description: PRK03381 Location: 52 9952 9-5301890 bp Feature: gene Location: 5301960-5303681 bp Ori: ORC09218.1 Feature: domain Description: SSL2 Location: 5301999-5303379 bp Feature: domain Description: SSL2 Location: 5301999-5303379 bp Feature: gene Location: 5304702-5305910 bp Ori: ORC10528.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5304888-5305512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5304888-5305512 bp Feature: domain Description: GIIM Note: maturase Location: 5305605-5305818 bp Feature: domain Description: GIIM Note: maturase Location: 5305605-5305818 bp Feature: gene Location: 5306128-5306970 bp Ori: ORC09219.1 Feature: domain Description: Germane Location: 5306287-5306629 bp Feature: domain Description: Germane Location: 53062 87-530662 9 bp Feature: domain Description: Gmad2 Location: 5306680-5306935 bp Feature: domain Description: Gmad2 Location: 5306680-5306935 bp Feature: gene Location: 5307420-5310578 bp Ori: ORC09220.1 Feature: domain Description: LanM-like Location: 5307948-5310573 bp Feature: domain Description: LanM-like Location: 5307948-5310573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, DDE_3 (pfam13358), COG5651 (PPE-repeat protein ), UgpE (COG0395), PBP2_TMBP_like (cd13585), GIIM (pfam08388), USPA (LOAD_USPA), 2A0306 (TIGR00909), rpsB (PRK12311)
NlpD (COG0739), Methyltransf_25 (pfam13649), COG3552 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain ), STKc_PknB_like (cd14014), Kelch (smart00612), Kelch_1 (pfam01344), T7SS_ESX_EspC (pfam10824), PRK03381 (PII uridylyl-transferase; Provisional), SSL2 (COG1061), Germane (smart00909)
Gmad2 (pfam10648), LanM-like (cd04792)