myRT

myRT report for GCA_002086925.1_ASM208692v1

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Seq: MWKX01000001.1 Mycobacterium persicum strain 3MK PseudoContig, whole genome shotgun sequence (6251123 bp)
Overview 1 RT 1: 971312-978310 bp 2 RT 2: 1151081-1157291 bp 3 RT 3: 2661047-2668130 bp 4 RT 4: 5196312-5207386 bp 5 RT 5: 5242321-5248498 bp Neighborhood of RT #1 [971312, 978378] UgpE PBP2_TMBP_like RVT-GII GIIM USPA USPA 2A0306 Neighborhood of RT #2 [1151081, 1157293] RsfS nadD RVT-GII GIIM Methyltransf_25 COG3552 Neighborhood of RT #3 [2661047, 2668159] STKc_PknB_like Kelch Kelch Kelch Kelch_1 Kelch RVT-GII GIIM T7SS_ESX_EspC Neighborhood of RT #4 [5196312, 5207391] PRK03381 SSL2 RVT-GII GIIM Germane Gmad2 LanM-like Neighborhood of RT #5 [5242321, 5248662] LMO_FMN xerC RVT-GII GIIM NlpD rpsB Feature: gene Location: 971312-972133 bp Ori: ORB93918.1 Feature: domain Description: UgpE Location: 971327-972131 bp Feature: domain Description: UgpE Location: 971 327-9721 31 bp Feature: gene Location: 972213-973541 bp Ori: ORB93919.1 Feature: domain Description: PBP2_TMBP_like Location: 972342-973512 bp Feature: domain Description: PBP2_TMBP_like Location: 972342-97351 2 bp Feature: gene Location: 973903-975165 bp Ori: ORB93920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974119-974779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9741 1 9-974779 bp Feature: domain Description: GIIM Note: maturase Location: 974863-975091 bp Feature: domain Description: GIIM Note: maturase Location: 974863-975091 bp Feature: gene Location: 976040-976912 bp Ori: ORB93921.1 Feature: domain Description: USPA Location: 976049-976451 bp Feature: domain Description: USPA Location: 976049-976451 bp Feature: domain Description: USPA Location: 976496-976907 bp Feature: domain Description: USPA Location: 976496-976907 bp Feature: gene Location: 976909-978378 bp Ori: ORB93922.1 Feature: domain Description: 2A0306 Location: 977002-978310 bp Feature: domain Description: 2A0306 Location: 977002-97831 0 bp Feature: gene Location: 1151081-1151461 bp Ori: ORB94062.1 Feature: domain Description: RsfS Location: 1151099-1151432 bp Feature: domain Description: RsfS Location: 1 1 51 099-1 1 51 432 bp Feature: gene Location: 1151458-1152123 bp Ori: ORB94063.1 Feature: domain Description: nadD Location: 1151473-1152064 bp Feature: domain Description: nadD Location: 1 1 51 473-1 1 52064 bp Feature: gene Location: 1152688-1153950 bp Ori: ORB94064.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152904-1153564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 52904-1 1 53564 bp Feature: domain Description: GIIM Note: maturase Location: 1153648-1153876 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 53648-1 1 53876 bp Feature: gene Location: 1154855-1155847 bp Ori: ORB94065.1 Feature: domain Description: Methyltransf_25 Location: 1155251-1155539 bp Feature: domain Description: Methyltransf_25 Location: 1 1 55251 -1 1 55539 bp Feature: gene Location: 1155854-1157293 bp Ori: ORB94066.1 Feature: domain Description: COG3552 Location: 1155857-1157291 bp Feature: domain Description: COG3552 Location: 1 1 55857-1 1 57291 bp Feature: gene Location: 2661047-2661994 bp Feature: domain Description: STKc_PknB_like Location: 2661065-2661836 bp Feature: domain Description: STKc_PknB_like Location: 2661 065-2661 836 bp Feature: gene Location: 2662189-2664234 bp Feature: domain Description: Kelch Location: 2662507-2662819 bp Feature: domain Description: Kelch Location: 2662507-266281 9 bp Feature: domain Description: Kelch Location: 2662831-2663242 bp Feature: domain Description: Kelch Location: 2662831 -2663242 bp Feature: domain Description: Kelch Location: 2663251-2663632 bp Feature: domain Description: Kelch Location: 2663251 -2663632 bp Feature: domain Description: Kelch_1 Location: 2663698-2663827 bp Feature: domain Description: Kelch_1 Location: 2663698-2663827 bp Feature: domain Description: Kelch Location: 2663836-2664226 bp Feature: domain Description: Kelch Location: 2663836-2664226 bp Feature: gene Location: 2664637-2665899 bp Ori: ORB95179.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664853-2665513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664853-266551 3 bp Feature: domain Description: GIIM Note: maturase Location: 2665597-2665825 bp Feature: domain Description: GIIM Note: maturase Location: 2665597-2665825 bp Feature: gene Location: 2667140-2667769 bp Feature: gene Location: 2667842-2668159 bp Ori: ORB95181.1 Feature: domain Description: T7SS_ESX_EspC Location: 2667848-2668130 bp Feature: domain Description: T7SS_ESX_EspC Location: 2667848-26681 30 bp Feature: gene Location: 5196312-5198759 bp Ori: ORB97048.1 Feature: domain Description: PRK03381 Location: 5196342-5198703 bp Feature: domain Description: PRK03381 Location: 51 96342-51 98703 bp Feature: gene Location: 5198773-5200494 bp Ori: ORB97049.1 Feature: domain Description: SSL2 Location: 5198812-5200192 bp Feature: domain Description: SSL2 Location: 51 9881 2-52001 92 bp Feature: gene Location: 5201515-5202723 bp Ori: ORB98493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5201701-5202325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5201 701 -5202325 bp Feature: domain Description: GIIM Note: maturase Location: 5202418-5202631 bp Feature: domain Description: GIIM Note: maturase Location: 520241 8-5202631 bp Feature: gene Location: 5202941-5203783 bp Ori: ORB97050.1 Feature: domain Description: Germane Location: 5203100-5203442 bp Feature: domain Description: Germane Location: 52031 00-5203442 bp Feature: domain Description: Gmad2 Location: 5203493-5203748 bp Feature: domain Description: Gmad2 Location: 5203493-5203748 bp Feature: gene Location: 5204233-5207391 bp Ori: ORB97051.1 Feature: domain Description: LanM-like Location: 5204761-5207386 bp Feature: domain Description: LanM-like Location: 5204761 -5207386 bp Feature: gene Location: 5242321-5243493 bp Ori: ORB98497.1 Feature: domain Description: LMO_FMN Location: 5242351-5243476 bp Feature: domain Description: LMO_FMN Location: 5242351 -5243476 bp Feature: gene Location: 5243546-5244433 bp Ori: ORB98498.1 Feature: domain Description: xerC Location: 5243552-5244431 bp Feature: domain Description: xerC Location: 5243552-5244431 bp Feature: gene Location: 5245352-5246614 bp Ori: ORB97081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5245568-5246228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5245568-5246228 bp Feature: domain Description: GIIM Note: maturase Location: 5246312-5246540 bp Feature: domain Description: GIIM Note: maturase Location: 524631 2-5246540 bp Feature: gene Location: 5247035-5247526 bp Ori: ORB97082.1 Feature: domain Description: NlpD Location: 5247101-5247440 bp Feature: domain Description: NlpD Location: 52471 01 -5247440 bp Feature: gene Location: 5247808-5248662 bp Ori: ORB97083.1 Feature: domain Description: rpsB Location: 5247811-5248498 bp Feature: domain Description: rpsB Location: 524781 1 -5248498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), PBP2_TMBP_like (cd13585), RVT-GII, GIIM (pfam08388), USPA (LOAD_USPA), 2A0306 (TIGR00909), RsfS (pfam02410), nadD (PRK07152), Methyltransf_25 (pfam13649), COG3552 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain )
STKc_PknB_like (cd14014), Kelch (smart00612), Kelch_1 (pfam01344), T7SS_ESX_EspC (pfam10824), PRK03381 (PII uridylyl-transferase; Provisional), SSL2 (COG1061), Germane (smart00909), Gmad2 (pfam10648), LanM-like (cd04792), LMO_FMN (cd03332)
xerC (PRK01287), NlpD (COG0739), rpsB (PRK12311)

Seq: MWKX01000032.1 Mycobacterium persicum strain 3MK Contig_m1_106_len:3410, whole genome shotgun sequence (3410 bp)
Overview 1 RT 1: 1-3410 bp Neighborhood of RT #1 [1, 3410] RVT-GII GIIM PRK06526 Feature: gene Location: 1-248 bp Feature: gene Location: 1838-2020 bp Feature: gene Location: 2179-2469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188-2290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 188-2 2 90 bp Feature: domain Description: GIIM Note: maturase Location: 2359-2470 bp Feature: domain Description: GIIM Note: maturase Location: 2 359-2 470 bp Feature: gene Location: 2647-3120 bp Feature: domain Description: PRK06526 Location: 2671-3109 bp Feature: domain Description: PRK0652 6 Location: 2 671-3109 bp Feature: gene Location: 3143-3410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06526 (transposase; Provisional)