myRT

myRT report for GCA_002087075.1_ASM208707v1

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Seq: MWSM01000034.1 Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455 CCUG_49455T_0000034, whole genome shotgun sequence (29921 bp)
Overview 1 RT 1: 5167-9899 bp Neighborhood of RT #1 [5167, 9901] TauC YqgV RVT-GII GIIM RVT-GII COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 COG4466 Feature: gene Location: 5167-5928 bp Ori: ORC39114.1 Feature: domain Description: TauC Location: 5179-5923 bp Feature: domain Description: TauC Location: 51 79-5923 bp Feature: gene Location: 5888-6178 bp Ori: ORC39115.1 Feature: domain Description: YqgV Location: 5891-6173 bp Feature: domain Description: YqgV Location: 5891 -61 73 bp Feature: gene Location: 6463-7379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6472-6922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6472-6922 bp Feature: domain Description: GIIM Note: maturase Location: 6976-7189 bp Feature: domain Description: GIIM Note: maturase Location: 6976-71 89 bp Feature: gene Location: 7351-7653 bp Ori: ORC39116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7555-7642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7555-7642 bp Feature: gene Location: 8428-9546 bp Ori: ORC39117.1 Feature: domain Description: COG3942 Location: 8434-9082 bp Feature: domain Description: COG3942 Location: 8434-9082 bp Feature: domain Description: CW_binding_1 Location: 9259-9307 bp Feature: domain Description: CW_binding_1 Location: 9259-9307 bp Feature: domain Description: CW_binding_1 Location: 9316-9370 bp Feature: domain Description: CW_binding_1 Location: 931 6-9370 bp Feature: domain Description: CW_binding_1 Location: 9376-9430 bp Feature: domain Description: CW_binding_1 Location: 9376-9430 bp Feature: domain Description: CW_binding_1 Location: 9436-9487 bp Feature: domain Description: CW_binding_1 Location: 9436-9487 bp Feature: gene Location: 9635-9901 bp Ori: ORC39118.1 Feature: domain Description: COG4466 Location: 9650-9899 bp Feature: domain Description: COG4466 Location: 9650-9899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauC (COG0600), YqgV (COG0011), RVT-GII, GIIM (pfam08388), COG3942 (Surface antigen ), CW_binding_1 (pfam01473), COG4466 (Uncharacterized protein Veg, DUF1021 family )

Seq: MWSM01000025.1 Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455 CCUG_49455T_0000025, whole genome shotgun sequence (30513 bp)
Overview 1 RT 1: 28548-30006 bp Neighborhood of RT #1 [28548, 30197] RVT-GII GIIM Feature: gene Location: 28548-28629 bp Feature: gene Location: 28665-28870 bp Feature: gene Location: 28920-30197 bp Ori: ORC39797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29124-29739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 912 4-2 9739 bp Feature: domain Description: GIIM Note: maturase Location: 29793-30006 bp Feature: domain Description: GIIM Note: maturase Location: 2 9793-30006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MWSM01000002.1 Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455 CCUG_49455T_0000002, whole genome shotgun sequence (51455 bp)
Overview 1 RT 1: 32840-40227 bp Neighborhood of RT #1 [32840, 40274] eno RVT-GII GIIM INT_ICEBs1_C_like rexB_recomb Feature: gene Location: 32840-34144 bp Ori: ORC42530.1 Feature: domain Description: eno Location: 32843-34136 bp Feature: domain Description: eno Location: 3 2843 -3 413 6 bp Feature: gene Location: 34176-34400 bp Feature: gene Location: 34820-36097 bp Ori: ORC42531.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35024-35639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5024-3 563 9 bp Feature: domain Description: GIIM Note: maturase Location: 35693-35906 bp Feature: domain Description: GIIM Note: maturase Location: 3 5693 -3 5906 bp Feature: gene Location: 36181-36540 bp Ori: ORC42532.1 Feature: domain Description: INT_ICEBs1_C_like Location: 36211-36475 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3 6211-3 6475 bp Feature: gene Location: 36999-40274 bp Ori: ORC42537.1 Feature: domain Description: rexB_recomb Location: 37005-40227 bp Feature: domain Description: rexB_recomb Location: 3 7005-40227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eno (TIGR01060), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), rexB_recomb (TIGR02774)

Seq: MWSM01000023.1 Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455 CCUG_49455T_0000023, whole genome shotgun sequence (49581 bp)
Overview 1 RT 1: 24407-28952 bp Neighborhood of RT #1 [24407, 28993] YneF HTH_29 RVT-GII RVT-GII PRK00106 SR_TndX_transposase Feature: gene Location: 24407-24655 bp Ori: ORC39957.1 Feature: domain Description: YneF Location: 24410-24620 bp Feature: domain Description: YneF Location: 24 4 10-24 620 bp Feature: gene Location: 24835-25541 bp Feature: domain Description: HTH_29 Location: 24859-25030 bp Feature: domain Description: HTH_29 Location: 24 859-25030 bp Feature: gene Location: 25623-26030 bp Ori: ORC39958.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25632-26028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25632-26028 bp Feature: gene Location: 26002-26304 bp Ori: ORC39959.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26206-26293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26206-26293 bp Feature: gene Location: 27008-28621 bp Ori: ORC39960.1 Feature: domain Description: PRK00106 Location: 27017-28619 bp Feature: domain Description: PRK00106 Location: 27017-28619 bp Feature: gene Location: 28673-28993 bp Ori: ORC39961.1 Feature: domain Description: SR_TndX_transposase Location: 28697-28952 bp Feature: domain Description: SR_TndX_transposase Location: 28697-28952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YneF (COG3763), HTH_29 (pfam13551), RVT-GII, PRK00106 (ribonuclease Y), SR_TndX_transposase (cd03770)