myRT

myRT report for GCA_002088015.1_ASM208801v1

Download annotations/find similar RTs

Seq: NARH01000035.1 Lactobacillus crispatus strain ATCC 33820 contig_35, whole genome shotgun sequence (20675 bp)
Overview 1 RT 1: 13836-17775 bp Neighborhood of RT #1 [13836, 17783] Tra8 group_II_RT_mat RVT-GII ribH PRK09311 Feature: gene Location: 13836-14563 bp Feature: domain Description: Tra8 Location: 13866-14331 bp Feature: domain Description: Tra8 Location: 1 3866-1 4331 bp Feature: gene Location: 15319-15501 bp Ori: ORE84577.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 15352-15475 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 5352-1 5475 bp Feature: gene Location: 15561-16048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15564-15708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5564-1 5708 bp Feature: gene Location: 16126-16590 bp Ori: ORE84578.1 Feature: domain Description: ribH Location: 16129-16585 bp Feature: domain Description: ribH Location: 1 61 29-1 6585 bp Feature: gene Location: 16605-17783 bp Ori: ORE84579.1 Feature: domain Description: PRK09311 Location: 16614-17775 bp Feature: domain Description: PRK0931 1 Location: 1 661 4-1 7775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), group_II_RT_mat (TIGR04416), RVT-GII, ribH (PRK00061), PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II)

Seq: NARH01000023.1 Lactobacillus crispatus strain ATCC 33820 contig_23, whole genome shotgun sequence (31933 bp)
Overview 1 RT 1: 25320-31636 bp Neighborhood of RT #1 [25320, 31636] scrB_fam HTH_LacI PBP1_Qymf_like RVT-GII GIIM SunT Feature: gene Location: 25320-26777 bp Ori: ORE84894.1 Feature: domain Description: scrB_fam Location: 25386-26697 bp Feature: domain Description: scrB_fam Location: 2 5386-2 6697 bp Feature: gene Location: 26793-27779 bp Ori: ORE84895.1 Feature: domain Description: HTH_LacI Location: 26814-26961 bp Feature: domain Description: HTH_LacI Location: 2 6814-2 6961 bp Feature: domain Description: PBP1_Qymf_like Location: 26979-27774 bp Feature: domain Description: PBP1_Qymf_like Location: 2 6979-2 7774 bp Feature: gene Location: 27851-29148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28052-28670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8052 -2 8670 bp Feature: domain Description: GIIM Note: maturase Location: 28727-28859 bp Feature: domain Description: GIIM Note: maturase Location: 2 872 7-2 8859 bp Feature: gene Location: 29755-31329 bp Ori: ORE84896.1 Feature: domain Description: SunT Location: 29803-31321 bp Feature: domain Description: SunT Location: 2 9803-3132 1 bp Feature: gene Location: 31319-31636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT scrB_fam (TIGR01322), HTH_LacI (cd01392), PBP1_Qymf_like, RVT-GII, GIIM (pfam08388), SunT (COG2274)

Seq: NARH01000034.1 Lactobacillus crispatus strain ATCC 33820 contig_34, whole genome shotgun sequence (23412 bp)
Overview 1 RT 1: 17347-21649 bp Neighborhood of RT #1 [17347, 21696] DUF3100 RVT-GII GIIM PurR DHDPS-like Feature: gene Location: 17347-18165 bp Ori: ORE84594.1 Feature: domain Description: DUF3100 Location: 17407-18109 bp Feature: domain Description: DUF3 100 Location: 17407-18109 bp Feature: gene Location: 18158-18649 bp Feature: gene Location: 18789-19466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18798-18990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18798-18990 bp Feature: domain Description: GIIM Note: maturase Location: 19044-19254 bp Feature: domain Description: GIIM Note: maturase Location: 19044-19254 bp Feature: gene Location: 19731-20723 bp Ori: ORE84596.1 Feature: domain Description: PurR Location: 19737-20721 bp Feature: domain Description: PurR Location: 1973 7-20721 bp Feature: gene Location: 20740-21696 bp Ori: ORE84599.1 Feature: domain Description: DHDPS-like Location: 20767-21649 bp Feature: domain Description: DHDPS-like Location: 20767-21649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3100 (pfam11299), RVT-GII, GIIM (pfam08388), PurR (COG1609), DHDPS-like (cd00408)