myRT

myRT report for GCA_002090935.1_ASM209093v1

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Seq: NABC01000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_0763_R1 NODE_33_length_53679_cov_1.4889_ID_65, whole genome shotgun sequence (53679 bp)
Overview 1 RT 1: 4902-9070 bp Neighborhood of RT #1 [4902, 9078] RVT-Retrons PRK10473 Feature: gene Location: 4902-5129 bp Feature: gene Location: 5192-6154 bp Feature: gene Location: 6220-7089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6265-6850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6265-6850 bp Feature: gene Location: 7337-7546 bp Feature: gene Location: 7891-9078 bp Feature: domain Description: PRK10473 Location: 7894-9070 bp Feature: domain Description: PRK1 0473 Location: 7894-9070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: NABC01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_0763_R1 NODE_37_length_47508_cov_1.75882_ID_73, whole genome shotgun sequence (47508 bp)
Overview 1 RT 1: 1702-6385 bp Neighborhood of RT #1 [1702, 6385] PRK13699 DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1702-2385 bp Feature: domain Description: PRK13699 Location: 1705-2383 bp Feature: domain Description: PRK13699 Location: 1705-2 383 bp Feature: gene Location: 2770-3672 bp Feature: domain Description: DUF1281 Location: 2839-3367 bp Feature: domain Description: DUF12 81 Location: 2 839-3367 bp Feature: domain Description: DUF1281_C Location: 3373-3613 bp Feature: domain Description: DUF12 81_C Location: 3373-3613 bp Feature: gene Location: 3749-5473 bp Feature: RT Description: RVT_N Location: 3806-4043 bp Feature: RT Description: RVT_N Location: 3806-4043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4094-4742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4094-4742 bp Feature: domain Description: YkfC Location: 4874-5030 bp Feature: domain Description: YkfC Location: 4874-5030 bp Feature: domain Description: HNHc Note: nucleases Location: 5258-5417 bp Feature: domain Description: HNHc Note: nucleases Location: 52 58-5417 bp Feature: gene Location: 5736-6032 bp Feature: gene Location: 6116-6385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)