myRT

myRT report for GCA_002091635.1_ASM209163v1

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Seq: BDAC01000009.1 Pseudomonas indica NBRC 103045 DNA, contig: PIN01S_CON0009_0001, whole genome shotgun sequence (213923 bp)
Overview 1 RT 1: 54938-65499 bp Neighborhood of RT #1 [54938, 65499] PRK05658 PBP2_BvgS_HisK_like PRK11359 PAS PRK11359 PRK11359 RVT-GII GIIM HNH COG3177 Feature: gene Location: 54938-56791 bp Feature: domain Description: PRK05658 Location: 54950-56789 bp Feature: domain Description: PRK05658 Location: 54950-56789 bp Feature: gene Location: 56942-60676 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 57047-57704 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 57047-57704 bp Feature: domain Description: PRK11359 Location: 57956-58604 bp Feature: domain Description: PRK1 1 359 Location: 57956-58604 bp Feature: domain Description: PAS Location: 58628-58907 bp Feature: domain Description: PAS Location: 58628-58907 bp Feature: domain Description: PRK11359 Location: 58919-59327 bp Feature: domain Description: PRK1 1 359 Location: 5891 9-59327 bp Feature: domain Description: PRK11359 Location: 59342-60617 bp Feature: domain Description: PRK1 1 359 Location: 59342-6061 7 bp Feature: gene Location: 62140-63465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62143-62734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621 43-62734 bp Feature: domain Description: GIIM Note: maturase Location: 62785-63019 bp Feature: domain Description: GIIM Note: maturase Location: 62785-6301 9 bp Feature: domain Description: HNH Note: nucleases Location: 63271-63409 bp Feature: domain Description: HNH Note: nucleases Location: 63271 -63409 bp Feature: gene Location: 63869-64990 bp Feature: domain Description: COG3177 Location: 63887-64979 bp Feature: domain Description: COG31 77 Location: 63887-64979 bp Feature: gene Location: 65284-65499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), PAS (smart00091), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: BDAC01000013.1 Pseudomonas indica NBRC 103045 DNA, contig: PIN01S_CON0013_0001, whole genome shotgun sequence (177080 bp)
Overview 1 RT 1: 165340-167847 bp Neighborhood of RT #1 [165340, 167915] TnpB_IS66 RVT-GII GIIM TnpB_IS66 IstB_IS21 Feature: gene Location: 165340-165501 bp Feature: domain Description: TnpB_IS66 Location: 165370-165478 bp Feature: domain Description: TnpB_IS66 Location: 165370-165478 bp Feature: gene Location: 166013-167281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166217-166874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 17-166874 bp Feature: domain Description: GIIM Note: maturase Location: 166952-167174 bp Feature: domain Description: GIIM Note: maturase Location: 166952 -167174 bp Feature: gene Location: 167315-167539 bp Feature: domain Description: TnpB_IS66 Location: 167339-167432 bp Feature: domain Description: TnpB_IS66 Location: 167339-167432 bp Feature: gene Location: 167637-167915 bp Feature: domain Description: IstB_IS21 Location: 167655-167847 bp Feature: domain Description: IstB_IS2 1 Location: 167655-167847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695)