myRT

myRT report for GCA_002091695.1_ASM209169v1

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Seq: BDAF01000002.1 Pseudomonas mandelii NBRC 103147 DNA, contig: PMA01S_CON0002_0001, whole genome shotgun sequence (297773 bp)
Overview 1 RT 1: 288836-294067 bp Neighborhood of RT #1 [288836, 294150] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 288836-289900 bp Feature: domain Description: PRK10431 Location: 288902-289268 bp Feature: domain Description: PRK1 0431 Location: 288902-289268 bp Feature: domain Description: PRK10319 Location: 289298-289886 bp Feature: domain Description: PRK1 031 9 Location: 289298-289886 bp Feature: gene Location: 290031-290489 bp Feature: domain Description: IS5 Location: 290034-290463 bp Feature: domain Description: IS5 Location: 290034-290463 bp Feature: gene Location: 290561-291829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290774-291431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290774-291 431 bp Feature: domain Description: GIIM Note: maturase Location: 291509-291731 bp Feature: domain Description: GIIM Note: maturase Location: 291 509-291 731 bp Feature: gene Location: 292322-292861 bp Feature: domain Description: IS5 Location: 292511-292838 bp Feature: domain Description: IS5 Location: 29251 1 -292838 bp Feature: gene Location: 293323-294150 bp Feature: domain Description: ABC_phnC Location: 293353-294067 bp Feature: domain Description: ABC_phnC Location: 293353-294067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: BDAF01000007.1 Pseudomonas mandelii NBRC 103147 DNA, contig: PMA01S_CON0007_0001, whole genome shotgun sequence (200104 bp)
Overview 1 RT 1: 80255-87923 bp Neighborhood of RT #1 [80255, 87928] PRK12488 Resolvase RVT-GII GIIM HNHc RVT_N RVT-GII PRK06156 RhtB Feature: gene Location: 80255-81919 bp Feature: domain Description: PRK12488 Location: 80285-81917 bp Feature: domain Description: PRK12 488 Location: 802 85-81917 bp Feature: gene Location: 81993-82562 bp Feature: gene Location: 82737-83834 bp Feature: domain Description: Resolvase Location: 82779-83085 bp Feature: domain Description: Resolvase Location: 82 779-83085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83100-83166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83100-83166 bp Feature: domain Description: GIIM Note: maturase Location: 83241-83472 bp Feature: domain Description: GIIM Note: maturase Location: 832 41-83472 bp Feature: domain Description: HNHc Note: nucleases Location: 83694-83826 bp Feature: domain Description: HNHc Note: nucleases Location: 83694-8382 6 bp Feature: gene Location: 84235-84972 bp Feature: domain Description: RVT_N Location: 84280-84523 bp Feature: domain Description: RVT_N Location: 842 80-8452 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84568-84949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84568-84949 bp Feature: gene Location: 85352-87091 bp Feature: domain Description: PRK06156 Location: 85358-87089 bp Feature: domain Description: PRK06156 Location: 85358-87089 bp Feature: gene Location: 87290-87928 bp Feature: domain Description: RhtB Location: 87311-87923 bp Feature: domain Description: RhtB Location: 87311-8792 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12488 (cation/acetate symporter), Resolvase (smart00857), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), PRK06156 (dipeptidase), RhtB (COG1280)

Seq: BDAF01000008.1 Pseudomonas mandelii NBRC 103147 DNA, contig: PMA01S_CON0008_0001, whole genome shotgun sequence (186797 bp)
Overview 1 RT 1: 185347-186629 bp Neighborhood of RT #1 [185347, 186796] DUF2790 RVT-GII GIIM Feature: gene Location: 185347-185544 bp Feature: gene Location: 185686-186018 bp Feature: domain Description: DUF2790 Location: 185728-186004 bp Feature: domain Description: DUF2790 Location: 185728-186004 bp Feature: gene Location: 186182-186796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186185-186347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186185-1863 47 bp Feature: domain Description: GIIM Note: maturase Location: 186401-186629 bp Feature: domain Description: GIIM Note: maturase Location: 186401-186629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2790 (pfam10976), RVT-GII, GIIM (pfam08388)

Seq: BDAF01000049.1 Pseudomonas mandelii NBRC 103147 DNA, contig: PMA01S_CON0049_0001, whole genome shotgun sequence (56164 bp)
Overview 1 RT 1: 3549-8260 bp Neighborhood of RT #1 [3549, 8260] COG4584 RVT-G2L4 Feature: gene Location: 3549-5057 bp Feature: domain Description: COG4584 Location: 3597-4383 bp Feature: domain Description: COG4 584 Location: 3597-4 383 bp Feature: gene Location: 5152-5412 bp Feature: gene Location: 6540-7820 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 6786-7371 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 6786-7371 bp Feature: gene Location: 7855-8049 bp Feature: gene Location: 8129-8260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-G2L4

Seq: BDAF01000064.1 Pseudomonas mandelii NBRC 103147 DNA, contig: PMA01S_CON0063_0001, whole genome shotgun sequence (25082 bp)
Overview 1 RT 1: 22235-25077 bp Neighborhood of RT #1 [22235, 25079] OprD RVT-GII Feature: gene Location: 22235-23560 bp Feature: domain Description: OprD Location: 22328-23555 bp Feature: domain Description: OprD Location: 22328-235 5 5 bp Feature: gene Location: 23950-24120 bp Feature: gene Location: 24270-25079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24627-25077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24627-25 077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OprD (pfam03573), RVT-GII