myRT

myRT report for GCA_002091775.1_ASM209177v1

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Seq: BDAJ01000006.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0006_0001, whole genome shotgun sequence (95595 bp)
Overview 1 RT 1: 83283-88401 bp Neighborhood of RT #1 [83283, 88430] Avd_like RVT-DGRs Avd_like RVT-DGRs tig Feature: gene Location: 83283-83624 bp Feature: domain Description: Avd_like Location: 83307-83616 bp Feature: domain Description: Avd_like Location: 83307-8361 6 bp Feature: gene Location: 83683-83829 bp Feature: gene Location: 83901-84986 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84111-84735 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 841 1 1 -84735 bp Feature: gene Location: 84979-85284 bp Feature: domain Description: Avd_like Location: 85006-85219 bp Feature: domain Description: Avd_like Location: 85006-8521 9 bp Feature: gene Location: 85238-86080 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85247-85859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85247-85859 bp Feature: gene Location: 86141-86794 bp Feature: gene Location: 87162-88430 bp Feature: domain Description: tig Location: 87165-88401 bp Feature: domain Description: tig Location: 871 65-88401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, tig (TIGR00115)

Seq: BDAJ01000017.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0017_0001, whole genome shotgun sequence (71278 bp)
Overview 1 RT 1: 2-4085 bp Neighborhood of RT #1 [2, 4405] RVT_N RVT-GII PRK15426 COG3179 Feature: gene Location: 2-871 bp Feature: RT Description: RVT_N Location: 62-305 bp Feature: RT Description: RVT_N Location: 62 -305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-869 bp Feature: gene Location: 2169-3359 bp Feature: domain Description: PRK15426 Location: 2814-3321 bp Feature: domain Description: PRK1542 6 Location: 2 814-332 1 bp Feature: gene Location: 3557-4405 bp Feature: domain Description: COG3179 Location: 3560-4085 bp Feature: domain Description: COG3179 Location: 3560-4085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15426 (cellulose biosynthesis regulator YedQ), RVT_N (pfam13655), RVT-GII

Seq: BDAJ01000034.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0034_0001, whole genome shotgun sequence (48799 bp)
Overview 1 RT 1: 30868-37520 bp Neighborhood of RT #1 [30868, 37552] ClpA IbpA RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C RAYT Feature: gene Location: 30868-33717 bp Feature: domain Description: ClpA Location: 31204-33586 bp Feature: domain Description: ClpA Location: 3 1204-3 3 586 bp Feature: gene Location: 33818-34390 bp Feature: domain Description: IbpA Location: 33977-34367 bp Feature: domain Description: IbpA Location: 3 3 977-3 43 67 bp Feature: gene Location: 34964-35800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35120-35429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5120-3 5429 bp Feature: gene Location: 35913-36929 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35937-36780 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 593 7-3 6780 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 36801-36912 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 6801-3 6912 bp Feature: gene Location: 37121-37552 bp Feature: domain Description: RAYT Location: 37127-37520 bp Feature: domain Description: RAYT Location: 3 7127-3 7520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ClpA (TIGR02639), IbpA (COG0071), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RAYT (COG1943)

Seq: BDAJ01000036.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0036_0001, whole genome shotgun sequence (44410 bp)
Overview 1 RT 1: 42260-44256 bp Neighborhood of RT #1 [42260, 44408] Trypsin_2 RVT-GII GIIM Feature: gene Location: 42260-42973 bp Feature: domain Description: Trypsin_2 Location: 42332-42830 bp Feature: domain Description: Trypsin_2 Location: 4 2332-4 2830 bp Feature: gene Location: 43441-43581 bp Feature: gene Location: 43662-44408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43665-43989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3665-4 3989 bp Feature: domain Description: GIIM Note: maturase Location: 44046-44256 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 04 6-4 4 256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-GII, GIIM (pfam08388)

Seq: BDAJ01000070.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0069_0001, whole genome shotgun sequence (22084 bp)
Overview 1 RT 1: 18913-22076 bp Neighborhood of RT #1 [18913, 22081] TnpB_IS66 RVT-GII GIIM TnpB_IS66 COG3436 Feature: gene Location: 18913-19056 bp Feature: gene Location: 19155-19358 bp Feature: domain Description: TnpB_IS66 Location: 19185-19335 bp Feature: domain Description: TnpB_IS66 Location: 19185 -19335 bp Feature: gene Location: 19870-21138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20074-20731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20074-20731 bp Feature: domain Description: GIIM Note: maturase Location: 20809-21031 bp Feature: domain Description: GIIM Note: maturase Location: 20809-21031 bp Feature: gene Location: 21172-21375 bp Feature: domain Description: TnpB_IS66 Location: 21196-21340 bp Feature: domain Description: TnpB_IS66 Location: 21196-21340 bp Feature: gene Location: 21395-22081 bp Feature: domain Description: COG3436 Location: 21641-22076 bp Feature: domain Description: COG3436 Location: 21641-22076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), COG3436 (Transposase )

Seq: BDAJ01000131.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0130_0001, whole genome shotgun sequence (6258 bp)
Overview 1 RT 1: 1-3046 bp Neighborhood of RT #1 [1, 3078] RVT-GII GIIM PRK11716 PRK05479 Feature: gene Location: 1-975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-526 bp Feature: domain Description: GIIM Note: maturase Location: 580-808 bp Feature: domain Description: GIIM Note: maturase Location: 580-808 bp Feature: gene Location: 1055-1936 bp Feature: domain Description: PRK11716 Location: 1133-1928 bp Feature: domain Description: PRK11716 Location: 1133-1928 bp Feature: gene Location: 2062-3078 bp Feature: domain Description: PRK05479 Location: 2065-3046 bp Feature: domain Description: PRK05479 Location: 206 5-3046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11716 (HTH-type transcriptional activator IlvY), RVT-GII, GIIM (pfam08388), PRK05479 (ketol-acid reductoisomerase; Provisional)

Seq: BDAJ01000161.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0160_0001, whole genome shotgun sequence (1919 bp)
Overview 1 RT 1: 523-1681 bp Neighborhood of RT #1 [523, 1848] RVT-GII GIIM Feature: gene Location: 523-1848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 84-1399 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1681 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDAJ01000164.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0163_0001, whole genome shotgun sequence (1870 bp)
Overview 1 RT 1: 479-1637 bp Neighborhood of RT #1 [479, 1804] RVT-GII GIIM Feature: gene Location: 479-1804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1409-1637 bp Feature: domain Description: GIIM Note: maturase Location: 1409-1637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDAJ01000178.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0177_0001, whole genome shotgun sequence (1202 bp)
Overview 1 RT 1: 3-1005 bp Neighborhood of RT #1 [3, 1199] RVT-GII YkfC Feature: gene Location: 3-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-669 bp Feature: domain Description: YkfC Location: 885-1005 bp Feature: domain Description: YkfC Location: 885-1005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344)

Seq: BDAJ01000183.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0182_0001, whole genome shotgun sequence (1046 bp)
Overview 1 RT 1: 1-808 bp Neighborhood of RT #1 [1, 975] RVT-GII GIIM Feature: gene Location: 1-975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-526 bp Feature: domain Description: GIIM Note: maturase Location: 580-808 bp Feature: domain Description: GIIM Note: maturase Location: 580-808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDAJ01000186.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0185_0001, whole genome shotgun sequence (894 bp)
Overview 1 RT 1: 3-891 bp Neighborhood of RT #1 [3, 893] RVT-GII Feature: gene Location: 3-185 bp Feature: gene Location: 276-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606-891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606-891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDAJ01000197.1 Pseudomonas pseudoalcaligenes NBRC 14167 DNA, contig: PPS01S_CON0196_0001, whole genome shotgun sequence (682 bp)
Overview 1 RT 1: 3-597 bp Neighborhood of RT #1 [3, 680] RVT-GII GIIM Feature: gene Location: 3-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-330 bp Feature: domain Description: GIIM Note: maturase Location: 387-597 bp Feature: domain Description: GIIM Note: maturase Location: 387-597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)