myRT

myRT report for GCA_002091815.1_ASM209181v1

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Seq: BDAL01000002.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0002_0001, whole genome shotgun sequence (203713 bp)
Overview 1 RT 1: 142621-148422 bp Neighborhood of RT #1 [142621, 148448] PRK15426 RVT_N RVT-GII GIIM HNHc TlyC Feature: gene Location: 142621-143781 bp Feature: domain Description: PRK15426 Location: 143266-143770 bp Feature: domain Description: PRK1 5426 Location: 1 43266-1 43770 bp Feature: gene Location: 144801-144929 bp Feature: gene Location: 145104-146114 bp Feature: domain Description: RVT_N Location: 145164-145407 bp Feature: domain Description: RVT_N Location: 1 451 64-1 45407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145455-146103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45455-1 461 03 bp Feature: gene Location: 146118-146837 bp Feature: domain Description: GIIM Note: maturase Location: 146184-146412 bp Feature: domain Description: GIIM Note: maturase Location: 1 461 84-1 4641 2 bp Feature: domain Description: HNHc Note: nucleases Location: 146640-146796 bp Feature: domain Description: HNHc Note: nucleases Location: 1 46640-1 46796 bp Feature: gene Location: 147075-148448 bp Feature: domain Description: TlyC Location: 147099-148422 bp Feature: domain Description: TlyC Location: 1 47099-1 48422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15426 (cellulose biosynthesis regulator YedQ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TlyC (COG1253)

Seq: BDAL01000019.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0019_0001, whole genome shotgun sequence (95427 bp)
Overview 1 RT 1: 12664-16886 bp Neighborhood of RT #1 [12664, 16886] P22_AR_N SLATT_5 RVT-UG17 YafY YafY Feature: gene Location: 12664-12927 bp Feature: domain Description: P22_AR_N Location: 12682-12805 bp Feature: domain Description: P2 2 _AR_N Location: 12 682 -12 805 bp Feature: gene Location: 13344-13943 bp Feature: domain Description: SLATT_5 Location: 13407-13908 bp Feature: domain Description: SLATT_5 Location: 13407-13908 bp Feature: gene Location: 13943-15307 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 14174-14774 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 14174-14774 bp Feature: gene Location: 15480-16358 bp Feature: domain Description: YafY Location: 15564-15642 bp Feature: domain Description: YafY Location: 15564-15642 bp Feature: domain Description: YafY Location: 15816-16080 bp Feature: domain Description: YafY Location: 15816-16080 bp Feature: gene Location: 16740-16886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P22_AR_N (pfam10547), SLATT_5 (pfam18160), RVT-UG17, YafY (COG2378)

Seq: BDAL01000040.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0040_0001, whole genome shotgun sequence (52108 bp)
Overview 1 RT 1: 31527-40679 bp Neighborhood of RT #1 [31527, 40732] AAA_15 AAA_15 RVT-UG5 YeeA TIGR02687 Feature: gene Location: 31527-32837 bp Feature: domain Description: AAA_15 Location: 31533-31692 bp Feature: domain Description: AAA_15 Location: 3 153 3 -3 1692 bp Feature: domain Description: AAA_15 Location: 32385-32664 bp Feature: domain Description: AAA_15 Location: 3 23 85-3 2664 bp Feature: gene Location: 32830-33360 bp Feature: gene Location: 33419-36439 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 33914-34385 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 3 914-3 43 85 bp Feature: gene Location: 36436-38217 bp Feature: domain Description: YeeA Location: 37159-38080 bp Feature: domain Description: YeeA Location: 3 7159-3 8080 bp Feature: gene Location: 38225-40732 bp Feature: domain Description: TIGR02687 Location: 38240-40679 bp Feature: domain Description: TIGR02687 Location: 3 8240-40679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-UG5, YeeA (COG1002), TIGR02687 (TIGR02687 family protein)

Seq: BDAL01000055.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0055_0001, whole genome shotgun sequence (28577 bp)
Overview 1 RT 1: 26345-28534 bp Neighborhood of RT #1 [26345, 28575] GRX_bact PspE RVT-GII GIIM HNHc Feature: gene Location: 26345-26605 bp Feature: domain Description: GRX_bact Location: 26357-26591 bp Feature: domain Description: GRX_bact Location: 26357-26591 bp Feature: gene Location: 26607-27020 bp Feature: domain Description: PspE Location: 26718-27018 bp Feature: domain Description: PspE Location: 26718-27018 bp Feature: gene Location: 27181-28575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27193-27844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27193-2784 4 bp Feature: domain Description: GIIM Note: maturase Location: 27922-28150 bp Feature: domain Description: GIIM Note: maturase Location: 27922-28150 bp Feature: domain Description: HNHc Note: nucleases Location: 28378-28534 bp Feature: domain Description: HNHc Note: nucleases Location: 28378-28534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GRX_bact (TIGR02181), PspE (COG0607), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BDAL01000069.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0069_0001, whole genome shotgun sequence (14651 bp)
Overview 1 RT 1: 1-2919 bp Neighborhood of RT #1 [1, 2924] RVT-GII GIIM DUF4124 SmpA_OmlA MgtE Feature: gene Location: 1-570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-15 1 bp Feature: domain Description: GIIM Note: maturase Location: 208-418 bp Feature: domain Description: GIIM Note: maturase Location: 208-418 bp Feature: gene Location: 665-1159 bp Feature: domain Description: DUF4124 Location: 722-815 bp Feature: domain Description: DUF4124 Location: 722-815 bp Feature: domain Description: SmpA_OmlA Location: 995-1154 bp Feature: domain Description: SmpA_OmlA Location: 995 -115 4 bp Feature: gene Location: 1482-2924 bp Feature: domain Description: MgtE Location: 1605-2919 bp Feature: domain Description: MgtE Location: 1605 -2919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4124 (pfam13511), SmpA_OmlA (pfam04355), MgtE (pfam01769)

Seq: BDAL01000077.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0077_0001, whole genome shotgun sequence (8663 bp)
Overview 1 RT 1: 5393-8620 bp Neighborhood of RT #1 [5393, 8661] dut PRK05579 RVT-GII GIIM HNHc Feature: gene Location: 5393-5848 bp Feature: domain Description: dut Location: 5399-5843 bp Feature: domain Description: dut Location: 5399-5843 bp Feature: gene Location: 5851-7059 bp Feature: domain Description: PRK05579 Location: 5857-7051 bp Feature: domain Description: PRK05579 Location: 5857-7051 bp Feature: gene Location: 7267-8661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7279-7930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7279-7930 bp Feature: domain Description: GIIM Note: maturase Location: 8008-8236 bp Feature: domain Description: GIIM Note: maturase Location: 8008-8236 bp Feature: domain Description: HNHc Note: nucleases Location: 8464-8620 bp Feature: domain Description: HNHc Note: nucleases Location: 846 4-86 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BDAL01000093.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0094_0001, whole genome shotgun sequence (1840 bp)
Overview 1 RT 1: 90-1838 bp Neighborhood of RT #1 [90, 1838] RVT-GII GIIM Feature: gene Location: 90-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1038 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1305 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1305 bp Feature: gene Location: 1548-1838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDAL01000104.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0105_0001, whole genome shotgun sequence (1154 bp)
Overview 1 RT 1: 2-1133 bp Neighborhood of RT #1 [2, 1153] RVT-GII GIIM Feature: gene Location: 2-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236-851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236-8 51 bp Feature: domain Description: GIIM Note: maturase Location: 905-1133 bp Feature: domain Description: GIIM Note: maturase Location: 905-1133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDAL01000109.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 DNA, contig: POL01S_CON0110_0001, whole genome shotgun sequence (974 bp)
Overview 1 RT 1: 3-924 bp Neighborhood of RT #1 [3, 971] RVT-GII GIIM Feature: gene Location: 3-971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-642 bp Feature: domain Description: GIIM Note: maturase Location: 696-924 bp Feature: domain Description: GIIM Note: maturase Location: 69 6-9 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)