myRT

myRT report for GCA_002093035.1_ASM209303v1

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Seq: NAHY01000816.1 Escherichia coli strain KCJK1866 NODE_68_length_11305_cov_13.8571_ID_135, whole genome shotgun sequence (11305 bp)
Overview 1 RT 1: 709-6749 bp Neighborhood of RT #1 [709, 6757] DHFR_1 PRK13746 RVT-GII GIIM efflux_Bcr_CflA PRK13746 Feature: gene Location: 709-1206 bp Ori: ORJ59148.1 Feature: domain Description: DHFR_1 Location: 733-1180 bp Feature: domain Description: DHFR_1 Location: 733-1 1 80 bp Feature: gene Location: 1614-2405 bp Ori: ORJ59149.1 Feature: domain Description: PRK13746 Location: 1617-2397 bp Feature: domain Description: PRK1 3746 Location: 1 61 7-2397 bp Feature: gene Location: 2494-3843 bp Ori: ORJ59150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-3394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-3394 bp Feature: domain Description: GIIM Note: maturase Location: 3442-3646 bp Feature: domain Description: GIIM Note: maturase Location: 3442-3646 bp Feature: gene Location: 4614-5873 bp Ori: ORJ59151.1 Feature: domain Description: efflux_Bcr_CflA Location: 4647-5790 bp Feature: domain Description: efflux_Bcr_CflA Location: 4647-5790 bp Feature: gene Location: 5966-6757 bp Ori: ORJ59152.1 Feature: domain Description: PRK13746 Location: 5969-6749 bp Feature: domain Description: PRK1 3746 Location: 5969-6749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), PRK13746 (aminoglycoside resistance protein; Provisional), RVT-GII, GIIM (pfam08388), efflux_Bcr_CflA (TIGR00710)

Seq: NAHY01000128.1 Escherichia coli strain KCJK1866 NODE_1_length_343161_cov_21.6378_ID_1, whole genome shotgun sequence (343161 bp)
Overview 1 RT 1: 178430-186240 bp Neighborhood of RT #1 [178430, 186245] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 178430-180706 bp Ori: ORJ78021.1 Feature: domain Description: Phage_GPA Location: 178829-179816 bp Feature: domain Description: Phage_GPA Location: 17882 9-179816 bp Feature: gene Location: 180810-181028 bp Feature: gene Location: 181194-182738 bp Ori: ORJ78022.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 181611-182064 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 181611-182 064 bp Feature: gene Location: 183253-184479 bp Ori: ORJ78023.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183439-184021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183439-18402 1 bp Feature: gene Location: 184476-185183 bp Feature: gene Location: 185226-186245 bp Ori: ORJ78025.1 Feature: domain Description: Q Location: 185229-186240 bp Feature: domain Description: Q Location: 1852 2 9-1862 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: NAHY01000390.1 Escherichia coli strain KCJK1866 NODE_804_length_312_cov_1.79767_ID_1607, whole genome shotgun sequence (312 bp)
Overview 1 RT 1: 13-109 bp Neighborhood of RT #1 [13, 312] RVT-GII Feature: gene Location: 13-312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NAHY01000681.1 Escherichia coli strain KCJK1866 NODE_332_length_1120_cov_3.28545_ID_665, whole genome shotgun sequence (1120 bp)
Overview 1 RT 1: 1-1115 bp Neighborhood of RT #1 [1, 1120] RVT-Retrons Feature: gene Location: 1-435 bp Feature: gene Location: 422-1120 bp Ori: ORJ69125.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 524-1115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 524 -1115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons