myRT

myRT report for GCA_002093895.1_ASM209389v1

Download annotations/find similar RTs

Seq: MUNJ01000002.1 Plesiomonas shigelloides strain LS1 Scaffold2_1, whole genome shotgun sequence (313721 bp)
Overview 1 RT 1: 13250-19768 bp Neighborhood of RT #1 [13250, 19768] GATase1_PfpI_2 RimI RVT-Retrons Feature: gene Location: 13250-13828 bp Feature: domain Description: GATase1_PfpI_2 Location: 13259-13808 bp Feature: domain Description: GATase1 _PfpI_2 Location: 1 3259-1 3808 bp Feature: gene Location: 14209-14718 bp Feature: domain Description: RimI Location: 14407-14662 bp Feature: domain Description: RimI Location: 1 4407-1 4662 bp Feature: gene Location: 15240-17087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15375-16089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5375-1 6089 bp Feature: gene Location: 17423-18583 bp Feature: gene Location: 18938-19768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_PfpI_2 (cd03139), RimI (COG0456), RVT-Retrons

Seq: MUNJ01000014.1 Plesiomonas shigelloides strain LS1 Scaffold14_1, whole genome shotgun sequence (115162 bp)
Overview 1 RT 1: 81258-89762 bp Neighborhood of RT #1 [81258, 89791] HsdM RVT-UG8 Inovirus_Gp2 HTH_17 Feature: gene Location: 81258-83741 bp Feature: domain Description: HsdM Location: 81450-82836 bp Feature: domain Description: HsdM Location: 81450-82 836 bp Feature: gene Location: 84331-84564 bp Feature: gene Location: 86531-88108 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 86666-87119 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 86666-87119 bp Feature: gene Location: 88743-89360 bp Feature: domain Description: Inovirus_Gp2 Location: 88860-89268 bp Feature: domain Description: Inovirus_Gp2 Location: 88860-892 68 bp Feature: gene Location: 89558-89791 bp Feature: domain Description: HTH_17 Location: 89618-89762 bp Feature: domain Description: HTH_17 Location: 89618-89762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-UG8, Inovirus_Gp2 (pfam11726), HTH_17 (pfam12728)

Seq: MUNJ01000042.1 Plesiomonas shigelloides strain LS1 Scaffold41_1, whole genome shotgun sequence (1936 bp)
Overview 1 RT 1: 310-1664 bp Neighborhood of RT #1 [310, 1852] RVT-GII GIIM Feature: gene Location: 310-471 bp Feature: gene Location: 542-1852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-13 94 bp Feature: domain Description: GIIM Note: maturase Location: 1448-1664 bp Feature: domain Description: GIIM Note: maturase Location: 1448-1664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)