myRT

myRT report for GCA_002093935.1_ASM209393v1

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Seq: MVAC01000112.1 Nocardia seriolae strain SY-24 Scaffold109_1, whole genome shotgun sequence (25585 bp)
Overview 1 RT 1: 22254-25515 bp Neighborhood of RT #1 [22254, 25515] DUF4096 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22254-22616 bp Feature: domain Description: DUF4096 Location: 22287-22515 bp Feature: domain Description: DUF4096 Location: 22287-2251 5 bp Feature: gene Location: 22691-23026 bp Feature: domain Description: DDE_Tnp_1 Location: 22697-22946 bp Feature: domain Description: DDE_Tnp_1 Location: 22697-22946 bp Feature: gene Location: 23484-25268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23745-24543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23745-24543 bp Feature: domain Description: Intron_maturas2 Location: 24660-24873 bp Feature: domain Description: Intron_maturas2 Location: 24660-24873 bp Feature: domain Description: HNHc Note: nucleases Location: 25068-25224 bp Feature: domain Description: HNHc Note: nucleases Location: 25068-25224 bp Feature: gene Location: 25285-25515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MVAC01000173.1 Nocardia seriolae strain SY-24 Scaffold169_1, whole genome shotgun sequence (13451 bp)
Overview 1 RT 1: 3649-6800 bp Neighborhood of RT #1 [3649, 6835] YkfC RVT-GII PHA02517 Tra8 Tra8 Tra8 Feature: gene Location: 3649-3888 bp Feature: gene Location: 4165-4533 bp Feature: domain Description: YkfC Location: 4312-4471 bp Feature: domain Description: YkfC Location: 4312 -4471 bp Feature: gene Location: 4530-5090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578-5028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578-502 8 bp Feature: gene Location: 5100-5345 bp Feature: domain Description: PHA02517 Location: 5109-5313 bp Feature: domain Description: PHA02 517 Location: 5109-5313 bp Feature: gene Location: 5522-6835 bp Feature: domain Description: Tra8 Location: 5675-5936 bp Feature: domain Description: Tra8 Location: 5675-5936 bp Feature: domain Description: Tra8 Location: 6035-6401 bp Feature: domain Description: Tra8 Location: 6035-6401 bp Feature: domain Description: Tra8 Location: 6467-6800 bp Feature: domain Description: Tra8 Location: 6467-6800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826)

Seq: MVAC01000285.1 Nocardia seriolae strain SY-24 Scaffold281_1, whole genome shotgun sequence (2145 bp)
Overview 1 RT 1: 3-2014 bp Neighborhood of RT #1 [3, 2043] DDE_5 RVT-GII Feature: gene Location: 3-1382 bp Feature: domain Description: DDE_5 Location: 66-690 bp Feature: domain Description: DDE_5 Location: 66-690 bp Feature: gene Location: 1402-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1717-2014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1717-2014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII

Seq: MVAC01000298.1 Nocardia seriolae strain SY-24 Scaffold294_1, whole genome shotgun sequence (1476 bp)
Overview 1 RT 1: 3-1224 bp Neighborhood of RT #1 [3, 1382] RVT-GII GIIM Feature: gene Location: 3-1382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-918 bp Feature: domain Description: GIIM Note: maturase Location: 993-1224 bp Feature: domain Description: GIIM Note: maturase Location: 993-1224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)