myRT

myRT report for GCA_002099715.1_ASM209971v1

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Seq: NADX01000046.1 Escherichia coli strain KCJK2549 NODE_25_length_73215_cov_10.9186_ID_49, whole genome shotgun sequence (73215 bp)
Overview 1 RT 1: 37853-41303 bp Neighborhood of RT #1 [37853, 41303] PRK01271 YhhI YhhI RVT-GII GIIM Feature: gene Location: 37853-38080 bp Ori: ORR94855.1 Feature: domain Description: PRK01271 Location: 37856-38078 bp Feature: domain Description: PRK01 271 Location: 37856-38078 bp Feature: gene Location: 38131-38904 bp Feature: domain Description: YhhI Location: 38134-38497 bp Feature: domain Description: YhhI Location: 381 34-38497 bp Feature: domain Description: YhhI Location: 38554-38905 bp Feature: domain Description: YhhI Location: 38554-38905 bp Feature: gene Location: 39111-40433 bp Ori: ORR94856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39387-40044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39387-40044 bp Feature: domain Description: GIIM Note: maturase Location: 40128-40338 bp Feature: domain Description: GIIM Note: maturase Location: 401 28-40338 bp Feature: gene Location: 40433-40641 bp Feature: gene Location: 40959-41303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: NADX01000003.1 Escherichia coli strain KCJK2549 NODE_49_length_19571_cov_12.3376_ID_97, whole genome shotgun sequence (19571 bp)
Overview 1 RT 1: 17224-19570 bp Neighborhood of RT #1 [17224, 19571] YeeP RVT-GII InsE Zn_Tnp_IS1 Feature: gene Location: 17224-18099 bp Ori: ORS00026.1 Feature: domain Description: YeeP Location: 17239-18097 bp Feature: domain Description: YeeP Location: 172 39-18097 bp Feature: gene Location: 18325-18567 bp Feature: gene Location: 18527-18839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18533-18623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18533-1862 3 bp Feature: gene Location: 19107-19445 bp Ori: ORS00027.1 Feature: domain Description: InsE Location: 19119-19392 bp Feature: domain Description: InsE Location: 19119-19392 bp Feature: gene Location: 19501-19571 bp Ori: ORS00029.1 Feature: domain Description: Zn_Tnp_IS1 Location: 19507-19570 bp Feature: domain Description: Zn_Tnp_IS1 Location: 19507-19570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), Zn_Tnp_IS1 (pfam03811)

Seq: NADX01000209.1 Escherichia coli strain KCJK2549 NODE_48_length_21876_cov_28.9968_ID_95, whole genome shotgun sequence (21876 bp)
Overview 1 RT 1: 8821-12295 bp Neighborhood of RT #1 [8821, 12312] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 8821-9129 bp Feature: domain Description: Rep_3 Location: 8827-9091 bp Feature: domain Description: Rep_3 Location: 8827-9091 bp Feature: gene Location: 9139-9836 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9145-9247 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9145-9247 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9268-9400 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9268-9400 bp Feature: gene Location: 9988-11472 bp Ori: ORR78295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10390-11080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 90-11080 bp Feature: gene Location: 11472-11723 bp Feature: gene Location: 11881-12312 bp Ori: ORR78297.1 Feature: domain Description: PRK10276 Location: 11932-12295 bp Feature: domain Description: PRK10276 Location: 1193 2-12295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)