myRT

myRT report for GCA_002099795.1_ASM209979v1

Download annotations/find similar RTs

Seq: NAEC01000002.1 Escherichia coli strain KCJK5678 NODE_46_length_19857_cov_33.8741_ID_91, whole genome shotgun sequence (19857 bp)
Overview 1 RT 1: 17510-19856 bp Neighborhood of RT #1 [17510, 19857] YeeP RVT-GII InsE Zn_Tnp_IS1 Feature: gene Location: 17510-18385 bp Ori: ORS11272.1 Feature: domain Description: YeeP Location: 17525-18383 bp Feature: domain Description: YeeP Location: 1 7525-1 8383 bp Feature: gene Location: 18611-18853 bp Feature: gene Location: 18813-19125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-18909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 881 9-1 8909 bp Feature: gene Location: 19393-19731 bp Ori: ORS11273.1 Feature: domain Description: InsE Location: 19405-19678 bp Feature: domain Description: InsE Location: 1 9405-1 9678 bp Feature: gene Location: 19787-19857 bp Ori: ORS11275.1 Feature: domain Description: Zn_Tnp_IS1 Location: 19793-19856 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1 9793-1 9856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), Zn_Tnp_IS1 (pfam03811)

Seq: NAEC01000020.1 Escherichia coli strain KCJK5678 NODE_28_length_48462_cov_29.5156_ID_55, whole genome shotgun sequence (48462 bp)
Overview 1 RT 1: 37331-40781 bp Neighborhood of RT #1 [37331, 40781] PRK01271 YhhI YhhI RVT-GII GIIM Feature: gene Location: 37331-37558 bp Ori: ORS07350.1 Feature: domain Description: PRK01271 Location: 37334-37556 bp Feature: domain Description: PRK012 71 Location: 37334-37556 bp Feature: gene Location: 37609-38382 bp Feature: domain Description: YhhI Location: 37612-37975 bp Feature: domain Description: YhhI Location: 37612 -37975 bp Feature: domain Description: YhhI Location: 38032-38383 bp Feature: domain Description: YhhI Location: 38032 -38383 bp Feature: gene Location: 38589-39911 bp Ori: ORS07351.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38865-39522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38865-3952 2 bp Feature: domain Description: GIIM Note: maturase Location: 39606-39816 bp Feature: domain Description: GIIM Note: maturase Location: 39606-39816 bp Feature: gene Location: 39911-40119 bp Feature: gene Location: 40437-40781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: NAEC01000068.1 Escherichia coli strain KCJK5678 NODE_45_length_21987_cov_49.3345_ID_89, whole genome shotgun sequence (21987 bp)
Overview 1 RT 1: 8932-12406 bp Neighborhood of RT #1 [8932, 12423] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 8932-9240 bp Feature: domain Description: Rep_3 Location: 8938-9202 bp Feature: domain Description: Rep_3 Location: 893 8-9202 bp Feature: gene Location: 9250-9947 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9256-9358 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9256-93 58 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9379-9511 bp Feature: domain Description: HTH_Tnp_IS1 Location: 93 79-9511 bp Feature: gene Location: 10099-11583 bp Ori: ORS00806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10501-11191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10501-11191 bp Feature: gene Location: 11583-11834 bp Feature: gene Location: 11992-12423 bp Ori: ORS00808.1 Feature: domain Description: PRK10276 Location: 12043-12406 bp Feature: domain Description: PRK10276 Location: 12043 -12406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)