myRT

myRT report for GCA_002099815.1_ASM209981v1

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Seq: NAED01000023.1 Escherichia coli strain KCJK5679 NODE_40_length_27990_cov_16.5124_ID_79, whole genome shotgun sequence (27990 bp)
Overview 1 RT 1: 12858-16308 bp Neighborhood of RT #1 [12858, 16308] PRK01271 YhhI YhhI RVT-GII GIIM Feature: gene Location: 12858-13085 bp Ori: ORS11188.1 Feature: domain Description: PRK01271 Location: 12861-13083 bp Feature: domain Description: PRK01 271 Location: 1 2861 -1 3083 bp Feature: gene Location: 13136-13909 bp Feature: domain Description: YhhI Location: 13139-13502 bp Feature: domain Description: YhhI Location: 1 31 39-1 3502 bp Feature: domain Description: YhhI Location: 13559-13910 bp Feature: domain Description: YhhI Location: 1 3559-1 391 0 bp Feature: gene Location: 14116-15438 bp Ori: ORS11189.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14392-15049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4392-1 5049 bp Feature: domain Description: GIIM Note: maturase Location: 15133-15343 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 33-1 5343 bp Feature: gene Location: 15438-15646 bp Feature: gene Location: 15964-16308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: NAED01000003.1 Escherichia coli strain KCJK5679 NODE_53_length_19857_cov_21.7248_ID_105, whole genome shotgun sequence (19857 bp)
Overview 1 RT 1: 17510-19856 bp Neighborhood of RT #1 [17510, 19857] YeeP RVT-GII InsE Zn_Tnp_IS1 Feature: gene Location: 17510-18385 bp Ori: ORS13740.1 Feature: domain Description: YeeP Location: 17525-18383 bp Feature: domain Description: YeeP Location: 1752 5-18383 bp Feature: gene Location: 18611-18853 bp Feature: gene Location: 18813-19125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-18909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-18909 bp Feature: gene Location: 19393-19731 bp Ori: ORS13741.1 Feature: domain Description: InsE Location: 19405-19678 bp Feature: domain Description: InsE Location: 19405-19678 bp Feature: gene Location: 19787-19857 bp Ori: ORS13743.1 Feature: domain Description: Zn_Tnp_IS1 Location: 19793-19856 bp Feature: domain Description: Zn_Tnp_IS1 Location: 19793-19856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), Zn_Tnp_IS1 (pfam03811)

Seq: NAED01000107.1 Escherichia coli strain KCJK5679 NODE_50_length_21987_cov_20.7234_ID_99, whole genome shotgun sequence (21987 bp)
Overview 1 RT 1: 8932-12406 bp Neighborhood of RT #1 [8932, 12423] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 8932-9240 bp Feature: domain Description: Rep_3 Location: 8938-9202 bp Feature: domain Description: Rep_3 Location: 893 8-9202 bp Feature: gene Location: 9250-9947 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9256-9358 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9256-93 58 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9379-9511 bp Feature: domain Description: HTH_Tnp_IS1 Location: 93 79-9511 bp Feature: gene Location: 10099-11583 bp Ori: ORS00830.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10501-11191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10501-11191 bp Feature: gene Location: 11583-11834 bp Feature: gene Location: 11992-12423 bp Ori: ORS00832.1 Feature: domain Description: PRK10276 Location: 12043-12406 bp Feature: domain Description: PRK10276 Location: 12043 -12406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)