myRT

myRT report for GCA_002099875.1_ASM209987v1

Download annotations/find similar RTs

Seq: NAEJ01000096.1 Escherichia coli strain KCJK5715 NODE_51_length_21876_cov_16.0959_ID_101, whole genome shotgun sequence (21876 bp)
Overview 1 RT 1: 8821-12295 bp Neighborhood of RT #1 [8821, 12312] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 8821-9129 bp Feature: domain Description: Rep_3 Location: 8827-9091 bp Feature: domain Description: Rep_3 Location: 8827-9091 bp Feature: gene Location: 9139-9836 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9145-9247 bp Feature: domain Description: Zn_Tnp_IS1 Location: 91 45-9247 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9268-9400 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9268-9400 bp Feature: gene Location: 9988-11472 bp Ori: ORS28386.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10390-11080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0390-1 1 080 bp Feature: gene Location: 11472-11723 bp Feature: gene Location: 11881-12312 bp Ori: ORS28388.1 Feature: domain Description: PRK10276 Location: 11932-12295 bp Feature: domain Description: PRK1 0276 Location: 1 1 932-1 2295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NAEJ01000003.1 Escherichia coli strain KCJK5715 NODE_55_length_19857_cov_13.7481_ID_109, whole genome shotgun sequence (19857 bp)
Overview 1 RT 1: 17510-19856 bp Neighborhood of RT #1 [17510, 19857] YeeP RVT-GII InsE Zn_Tnp_IS1 Feature: gene Location: 17510-18385 bp Ori: ORS41084.1 Feature: domain Description: YeeP Location: 17525-18383 bp Feature: domain Description: YeeP Location: 1752 5-18383 bp Feature: gene Location: 18611-18853 bp Feature: gene Location: 18813-19125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-18909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-18909 bp Feature: gene Location: 19393-19731 bp Ori: ORS41085.1 Feature: domain Description: InsE Location: 19405-19678 bp Feature: domain Description: InsE Location: 19405-19678 bp Feature: gene Location: 19787-19857 bp Ori: ORS41087.1 Feature: domain Description: Zn_Tnp_IS1 Location: 19793-19856 bp Feature: domain Description: Zn_Tnp_IS1 Location: 19793-19856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), Zn_Tnp_IS1 (pfam03811)

Seq: NAEJ01000024.1 Escherichia coli strain KCJK5715 NODE_28_length_53256_cov_11.7753_ID_55, whole genome shotgun sequence (53256 bp)
Overview 1 RT 1: 37853-41303 bp Neighborhood of RT #1 [37853, 41303] PRK01271 YhhI YhhI RVT-GII GIIM Feature: gene Location: 37853-38080 bp Ori: ORS38137.1 Feature: domain Description: PRK01271 Location: 37856-38078 bp Feature: domain Description: PRK01271 Location: 3 7856-3 8078 bp Feature: gene Location: 38131-38904 bp Feature: domain Description: YhhI Location: 38134-38497 bp Feature: domain Description: YhhI Location: 3 813 4-3 8497 bp Feature: domain Description: YhhI Location: 38554-38905 bp Feature: domain Description: YhhI Location: 3 8554-3 8905 bp Feature: gene Location: 39111-40433 bp Ori: ORS38138.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39387-40044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 87-40044 bp Feature: domain Description: GIIM Note: maturase Location: 40128-40338 bp Feature: domain Description: GIIM Note: maturase Location: 40128-403 3 8 bp Feature: gene Location: 40433-40641 bp Feature: gene Location: 40959-41303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), RVT-GII, GIIM (pfam08388)