myRT

myRT report for GCA_002100025.1_ASM210002v1

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Seq: NAEE01000002.1 Escherichia coli strain KCJK5680 NODE_46_length_19857_cov_22.7744_ID_91, whole genome shotgun sequence (19857 bp)
Overview 1 RT 1: 17510-19856 bp Neighborhood of RT #1 [17510, 19857] YeeP RVT-GII InsE Zn_Tnp_IS1 Feature: gene Location: 17510-18385 bp Ori: ORS14164.1 Feature: domain Description: YeeP Location: 17525-18383 bp Feature: domain Description: YeeP Location: 1 7525-1 8383 bp Feature: gene Location: 18611-18853 bp Feature: gene Location: 18813-19125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-18909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 881 9-1 8909 bp Feature: gene Location: 19393-19731 bp Ori: ORS14165.1 Feature: domain Description: InsE Location: 19405-19678 bp Feature: domain Description: InsE Location: 1 9405-1 9678 bp Feature: gene Location: 19787-19857 bp Ori: ORS14167.1 Feature: domain Description: Zn_Tnp_IS1 Location: 19793-19856 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1 9793-1 9856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), Zn_Tnp_IS1 (pfam03811)

Seq: NAEE01000068.1 Escherichia coli strain KCJK5680 NODE_45_length_21876_cov_25.3191_ID_89, whole genome shotgun sequence (21876 bp)
Overview 1 RT 1: 8821-12295 bp Neighborhood of RT #1 [8821, 12312] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 8821-9129 bp Feature: domain Description: Rep_3 Location: 8827-9091 bp Feature: domain Description: Rep_3 Location: 882 7-9091 bp Feature: gene Location: 9139-9836 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9145-9247 bp Feature: domain Description: Zn_Tnp_IS1 Location: 9145-92 47 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9268-9400 bp Feature: domain Description: HTH_Tnp_IS1 Location: 92 68-9400 bp Feature: gene Location: 9988-11472 bp Ori: ORS01584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10390-11080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10390-11080 bp Feature: gene Location: 11472-11723 bp Feature: gene Location: 11881-12312 bp Ori: ORS01586.1 Feature: domain Description: PRK10276 Location: 11932-12295 bp Feature: domain Description: PRK102 76 Location: 11932 -12 2 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NAEE01000019.1 Escherichia coli strain KCJK5680 NODE_28_length_49614_cov_19.6944_ID_55, whole genome shotgun sequence (49614 bp)
Overview 1 RT 1: 37853-41303 bp Neighborhood of RT #1 [37853, 41303] PRK01271 YhhI YhhI RVT-GII GIIM Feature: gene Location: 37853-38080 bp Ori: ORS11883.1 Feature: domain Description: PRK01271 Location: 37856-38078 bp Feature: domain Description: PRK01271 Location: 3 7856-3 8078 bp Feature: gene Location: 38131-38904 bp Feature: domain Description: YhhI Location: 38134-38497 bp Feature: domain Description: YhhI Location: 3 813 4-3 8497 bp Feature: domain Description: YhhI Location: 38554-38905 bp Feature: domain Description: YhhI Location: 3 8554-3 8905 bp Feature: gene Location: 39111-40433 bp Ori: ORS11884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39387-40044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 87-40044 bp Feature: domain Description: GIIM Note: maturase Location: 40128-40338 bp Feature: domain Description: GIIM Note: maturase Location: 40128-403 3 8 bp Feature: gene Location: 40433-40641 bp Feature: gene Location: 40959-41303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), RVT-GII, GIIM (pfam08388)