myRT

myRT report for GCA_002100045.1_ASM210004v1

Download annotations/find similar RTs

Seq: NAEM01000054.1 Escherichia coli strain KCJK1477 NODE_21_length_82927_cov_5.61222_ID_41, whole genome shotgun sequence (82927 bp)
Overview 1 RT 1: 63317-69879 bp Neighborhood of RT #1 [63317, 69887] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 63317-63592 bp Feature: domain Description: DUF5405 Location: 63335-63575 bp Feature: domain Description: DUF5405 Location: 63335-63575 bp Feature: gene Location: 63582-65852 bp Feature: domain Description: Phage_GPA Location: 63981-64968 bp Feature: domain Description: Phage_GPA Location: 63981 -64968 bp Feature: gene Location: 66179-67168 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66296-66857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66296-66857 bp Feature: gene Location: 67170-68522 bp Feature: domain Description: ABC_ATPase Location: 67230-67953 bp Feature: domain Description: ABC_ATPase Location: 67230-67953 bp Feature: gene Location: 68853-69887 bp Feature: domain Description: Q Location: 68856-69879 bp Feature: domain Description: Q Location: 68856-69879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)

Seq: NAEM01000197.1 Escherichia coli strain KCJK1477 NODE_105_length_5673_cov_5.83538_ID_209, whole genome shotgun sequence (5673 bp)
Overview 1 RT 1: 2304-5457 bp Neighborhood of RT #1 [2304, 5457] DcuC RVT-GII Feature: gene Location: 2304-3665 bp Feature: domain Description: DcuC Location: 2307-3639 bp Feature: domain Description: DcuC Location: 2 307-3639 bp Feature: gene Location: 3718-3945 bp Feature: gene Location: 4299-5207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605-5202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605-52 02 bp Feature: gene Location: 5255-5457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII

Seq: NAEM01000071.1 Escherichia coli strain KCJK1477 NODE_14_length_103278_cov_5.57248_ID_27, whole genome shotgun sequence (103278 bp)
Overview 1 RT 1: 58162-62041 bp Neighborhood of RT #1 [58162, 62046] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 58162-58878 bp Feature: domain Description: rph Location: 58165-58873 bp Feature: domain Description: rph Location: 58165-58873 bp Feature: gene Location: 58944-59585 bp Feature: domain Description: pyrE Location: 58947-59580 bp Feature: domain Description: pyrE Location: 58947-59580 bp Feature: gene Location: 59883-60842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60018-60567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60018-60567 bp Feature: gene Location: 60888-61484 bp Feature: domain Description: slmA Location: 60894-61470 bp Feature: domain Description: slmA Location: 60894-61470 bp Feature: gene Location: 61591-62046 bp Feature: domain Description: dut Location: 61594-62041 bp Feature: domain Description: dut Location: 61594-62041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)