myRT

myRT report for GCA_002100195.1_ASM210019v1

Download annotations/find similar RTs

Seq: MRLI01000050.1 Francisella tularensis subsp. holarctica strain F0624 F0624_50, whole genome shotgun sequence (36364 bp)
Overview 1 RT 1: 1-4491 bp Neighborhood of RT #1 [1, 4496] DDE_3 RVT-Retrons KOG0539 rlmL Feature: gene Location: 1-282 bp Ori: ORU83977.1 Feature: domain Description: DDE_3 Location: 4-232 bp Feature: domain Description: DDE_3 Location: 4-232 bp Feature: gene Location: 254-748 bp Ori: ORU83978.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 272-584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 272-584 bp Feature: gene Location: 1714-2268 bp Ori: ORU83979.1 Feature: domain Description: KOG0539 Location: 1786-2263 bp Feature: domain Description: KOG0539 Location: 1 786-2263 bp Feature: gene Location: 2343-4496 bp Ori: ORU83980.1 Feature: domain Description: rlmL Location: 2355-4491 bp Feature: domain Description: rlmL Location: 2355-4491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons, KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), rlmL (PRK11783)

Seq: MRLI01000148.1 Francisella tularensis subsp. holarctica strain F0624 F0624_148, whole genome shotgun sequence (7198 bp)
Overview 1 RT 1: 2232-7133 bp Neighborhood of RT #1 [2232, 7198] RVT-UG4 DUF2797 COG3415 Feature: gene Location: 2232-2457 bp Feature: gene Location: 2794-5065 bp Feature: gene Location: 5071-5503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-52 57 bp Feature: gene Location: 5744-6559 bp Ori: ORU83079.1 Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: domain Description: DUF2 797 Location: 5846-6542 bp Feature: gene Location: 6935-7198 bp Ori: ORU83080.1 Feature: domain Description: COG3415 Location: 6947-7133 bp Feature: domain Description: COG3415 Location: 6947-7133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977), COG3415 (Transposase )

Seq: MRLI01000075.1 Francisella tularensis subsp. holarctica strain F0624 F0624_75, whole genome shotgun sequence (42752 bp)
Overview 1 RT 1: 25297-28919 bp Neighborhood of RT #1 [25297, 28919] SufE DsbB RVT-UG4 Feature: gene Location: 25297-25713 bp Ori: ORU83732.1 Feature: domain Description: SufE Location: 25336-25690 bp Feature: domain Description: SufE Location: 253 3 6-25690 bp Feature: gene Location: 26420-26956 bp Ori: ORU83733.1 Feature: domain Description: DsbB Location: 26453-26903 bp Feature: domain Description: DsbB Location: 26453 -26903 bp Feature: gene Location: 27268-27495 bp Ori: ORU83734.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 27334-27439 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 273 3 4-2743 9 bp Feature: gene Location: 28258-28671 bp Feature: gene Location: 28722-28919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4