myRT

myRT report for GCA_002100255.1_ASM210025v1

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Seq: MRJQ01000094.1 Francisella tularensis subsp. holarctica strain FSC247 FSC247_94, whole genome shotgun sequence (7742 bp)
Overview 1 RT 1: 2232-7280 bp Neighborhood of RT #1 [2232, 7315] RVT-UG4 DUF2797 COG3415 Feature: gene Location: 2232-2457 bp Feature: gene Location: 2794-5065 bp Feature: gene Location: 5071-5503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: gene Location: 5744-6559 bp Ori: ORU09429.1 Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: gene Location: 6935-7315 bp Ori: ORU09430.1 Feature: domain Description: COG3415 Location: 6947-7280 bp Feature: domain Description: COG341 5 Location: 6947-7280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977), COG3415 (Transposase )

Seq: MRJQ01000030.1 Francisella tularensis subsp. holarctica strain FSC247 FSC247_30, whole genome shotgun sequence (46507 bp)
Overview 1 RT 1: 28508-32130 bp Neighborhood of RT #1 [28508, 32130] SufE DsbB RVT-UG4 Feature: gene Location: 28508-28924 bp Ori: ORU10910.1 Feature: domain Description: SufE Location: 28547-28901 bp Feature: domain Description: SufE Location: 2 8547-2 8901 bp Feature: gene Location: 29631-30167 bp Ori: ORU10911.1 Feature: domain Description: DsbB Location: 29664-30114 bp Feature: domain Description: DsbB Location: 2 9664-30114 bp Feature: gene Location: 30479-30706 bp Ori: ORU10912.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30545-30650 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30545-30650 bp Feature: gene Location: 31469-31882 bp Feature: gene Location: 31933-32130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4

Seq: MRJQ01000064.1 Francisella tularensis subsp. holarctica strain FSC247 FSC247_64, whole genome shotgun sequence (37101 bp)
Overview 1 RT 1: 33-4715 bp Neighborhood of RT #1 [33, 4720] DDE_3 RVT-Retrons KOG0539 rlmL Feature: gene Location: 33-506 bp Ori: ORU10314.1 Feature: domain Description: DDE_3 Location: 39-456 bp Feature: domain Description: DDE_3 Location: 3 9-456 bp Feature: gene Location: 478-972 bp Ori: ORU10286.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 496-808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 496-808 bp Feature: gene Location: 1938-2492 bp Ori: ORU10287.1 Feature: domain Description: KOG0539 Location: 2010-2487 bp Feature: domain Description: KOG053 9 Location: 2010-2487 bp Feature: gene Location: 2567-4720 bp Ori: ORU10288.1 Feature: domain Description: rlmL Location: 2579-4715 bp Feature: domain Description: rlmL Location: 2579-4715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons, KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), rlmL (PRK11783)