myRT

myRT report for GCA_002100275.1_ASM210027v1

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Seq: MRJO01000039.1 Francisella tularensis subsp. holarctica strain FSC456 FSC456_39, whole genome shotgun sequence (36750 bp)
Overview 1 RT 1: 32031-36668 bp Neighborhood of RT #1 [32031, 36718] rlmL KOG0539 RVT-Retrons DDE_3 Feature: gene Location: 32031-34184 bp Ori: ORU07356.1 Feature: domain Description: rlmL Location: 32043-34179 bp Feature: domain Description: rlmL Location: 32043-341 79 bp Feature: gene Location: 34259-34813 bp Ori: ORU07357.1 Feature: domain Description: KOG0539 Location: 34331-34808 bp Feature: domain Description: KOG0539 Location: 34331 -34808 bp Feature: gene Location: 35779-36273 bp Ori: ORU07358.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35797-36109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35797-361 09 bp Feature: gene Location: 36245-36718 bp Ori: ORU07360.1 Feature: domain Description: DDE_3 Location: 36251-36668 bp Feature: domain Description: DDE_3 Location: 36251 -36668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rlmL (PRK11783), KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), RVT-Retrons, DDE_3 (pfam13358)

Seq: MRJO01000003.1 Francisella tularensis subsp. holarctica strain FSC456 FSC456_3, whole genome shotgun sequence (46049 bp)
Overview 1 RT 1: 13944-17543 bp Neighborhood of RT #1 [13944, 17566] RVT-UG4 DsbB SufE Feature: gene Location: 13944-14141 bp Feature: gene Location: 14192-14605 bp Feature: gene Location: 15368-15595 bp Ori: ORU07991.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15434-15539 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15434-15539 bp Feature: gene Location: 15907-16443 bp Ori: ORU07992.1 Feature: domain Description: DsbB Location: 15940-16390 bp Feature: domain Description: DsbB Location: 15940-16390 bp Feature: gene Location: 17150-17566 bp Ori: ORU07993.1 Feature: domain Description: SufE Location: 17189-17543 bp Feature: domain Description: SufE Location: 17189-17543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DsbB (pfam02600), SufE (pfam02657)

Seq: MRJO01000017.1 Francisella tularensis subsp. holarctica strain FSC456 FSC456_17, whole genome shotgun sequence (7308 bp)
Overview 1 RT 1: 1-5077 bp Neighborhood of RT #1 [1, 5077] COG3415 DUF2797 RVT-UG4 Feature: gene Location: 1-374 bp Ori: ORU07761.1 Feature: domain Description: COG3415 Location: 13-346 bp Feature: domain Description: COG3 415 Location: 13 -3 46 bp Feature: gene Location: 750-1565 bp Ori: ORU07759.1 Feature: domain Description: DUF2797 Location: 852-1548 bp Feature: domain Description: DUF2797 Location: 852-1548 bp Feature: gene Location: 1806-2238 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1812-1992 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1812-1992 bp Feature: gene Location: 2244-4515 bp Feature: gene Location: 4852-5077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DUF2797 (pfam10977), RVT-UG4