myRT

myRT report for GCA_002100535.1_ASM210053v1

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Seq: MRKC01000048.1 Francisella tularensis subsp. holarctica strain FDC428 FDC428_48, whole genome shotgun sequence (46128 bp)
Overview 1 RT 1: 28508-32130 bp Neighborhood of RT #1 [28508, 32130] SufE DsbB RVT-UG4 Feature: gene Location: 28508-28924 bp Ori: ORU30414.1 Feature: domain Description: SufE Location: 28547-28901 bp Feature: domain Description: SufE Location: 28547-28901 bp Feature: gene Location: 29631-30167 bp Ori: ORU30415.1 Feature: domain Description: DsbB Location: 29664-30114 bp Feature: domain Description: DsbB Location: 29664-301 1 4 bp Feature: gene Location: 30479-30706 bp Ori: ORU30416.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30545-30650 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30545-30650 bp Feature: gene Location: 31469-31882 bp Feature: gene Location: 31933-32130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4

Seq: MRKC01000070.1 Francisella tularensis subsp. holarctica strain FDC428 FDC428_70, whole genome shotgun sequence (7363 bp)
Overview 1 RT 1: 49-5132 bp Neighborhood of RT #1 [49, 5132] COG3415 DUF2797 RVT-UG4 Feature: gene Location: 49-429 bp Ori: ORU29770.1 Feature: domain Description: COG3415 Location: 61-394 bp Feature: domain Description: COG3415 Location: 61-394 bp Feature: gene Location: 805-1620 bp Ori: ORU29771.1 Feature: domain Description: DUF2797 Location: 907-1603 bp Feature: domain Description: DUF2 797 Location: 907-1603 bp Feature: gene Location: 1861-2293 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1867-2047 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1867-2 047 bp Feature: gene Location: 2299-4570 bp Feature: gene Location: 4907-5132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DUF2797 (pfam10977), RVT-UG4

Seq: MRKC01000008.1 Francisella tularensis subsp. holarctica strain FDC428 FDC428_8, whole genome shotgun sequence (36348 bp)
Overview 1 RT 1: 31605-36281 bp Neighborhood of RT #1 [31605, 36331] rlmL KOG0539 RVT-Retrons DDE_3 Feature: gene Location: 31605-33758 bp Ori: ORU31423.1 Feature: domain Description: rlmL Location: 31617-33753 bp Feature: domain Description: rlmL Location: 3 1617-3 3 753 bp Feature: gene Location: 33833-34387 bp Ori: ORU31424.1 Feature: domain Description: KOG0539 Location: 33905-34382 bp Feature: domain Description: KOG053 9 Location: 3 3 905-3 43 82 bp Feature: gene Location: 35353-35847 bp Ori: ORU31425.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35371-35683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 53 71-3 5683 bp Feature: gene Location: 35819-36331 bp Ori: ORU31426.1 Feature: domain Description: DDE_3 Location: 35864-36281 bp Feature: domain Description: DDE_3 Location: 3 5864-3 6281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rlmL (PRK11783), KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), RVT-Retrons, DDE_3 (pfam13358)