myRT

myRT report for GCA_002100565.1_ASM210056v1

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Seq: MRJY01000039.1 Francisella tularensis subsp. holarctica strain FDC432 FDC432_39, whole genome shotgun sequence (7363 bp)
Overview 1 RT 1: 2232-7280 bp Neighborhood of RT #1 [2232, 7315] RVT-UG4 DUF2797 COG3415 Feature: gene Location: 2232-2457 bp Feature: gene Location: 2794-5065 bp Feature: gene Location: 5071-5503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: gene Location: 5744-6559 bp Ori: ORU27739.1 Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: gene Location: 6935-7315 bp Ori: ORU27740.1 Feature: domain Description: COG3415 Location: 6947-7280 bp Feature: domain Description: COG341 5 Location: 6947-7280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977), COG3415 (Transposase )

Seq: MRJY01000049.1 Francisella tularensis subsp. holarctica strain FDC432 FDC432_49, whole genome shotgun sequence (31779 bp)
Overview 1 RT 1: 27036-31712 bp Neighborhood of RT #1 [27036, 31762] rlmL KOG0539 RVT-Retrons DDE_3 Feature: gene Location: 27036-29189 bp Ori: ORU27625.1 Feature: domain Description: rlmL Location: 27048-29184 bp Feature: domain Description: rlmL Location: 2 7048-2 9184 bp Feature: gene Location: 29264-29818 bp Ori: ORU27626.1 Feature: domain Description: KOG0539 Location: 29336-29813 bp Feature: domain Description: KOG0539 Location: 2 9336-2 9813 bp Feature: gene Location: 30784-31278 bp Ori: ORU27627.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30802-31114 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30802 -31114 bp Feature: gene Location: 31250-31762 bp Ori: ORU27628.1 Feature: domain Description: DDE_3 Location: 31295-31712 bp Feature: domain Description: DDE_3 Location: 312 95-31712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rlmL (PRK11783), KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), RVT-Retrons, DDE_3 (pfam13358)

Seq: MRJY01000007.1 Francisella tularensis subsp. holarctica strain FDC432 FDC432_7, whole genome shotgun sequence (46128 bp)
Overview 1 RT 1: 13999-17598 bp Neighborhood of RT #1 [13999, 17621] RVT-UG4 DsbB SufE Feature: gene Location: 13999-14196 bp Feature: gene Location: 14247-14660 bp Feature: gene Location: 15423-15650 bp Ori: ORU28242.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15489-15594 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15489-15594 bp Feature: gene Location: 15962-16498 bp Ori: ORU28243.1 Feature: domain Description: DsbB Location: 15995-16445 bp Feature: domain Description: DsbB Location: 15995-16445 bp Feature: gene Location: 17205-17621 bp Ori: ORU28244.1 Feature: domain Description: SufE Location: 17244-17598 bp Feature: domain Description: SufE Location: 17244-17598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DsbB (pfam02600), SufE (pfam02657)