myRT

myRT report for GCA_002100625.1_ASM210062v1

Download annotations/find similar RTs

Seq: MRJW01000080.1 Francisella tularensis subsp. holarctica strain FDC434 FDC434_80, whole genome shotgun sequence (7363 bp)
Overview 1 RT 1: 2232-7280 bp Neighborhood of RT #1 [2232, 7315] RVT-UG4 DUF2797 COG3415 Feature: gene Location: 2232-2457 bp Feature: gene Location: 2794-5065 bp Feature: gene Location: 5071-5503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: gene Location: 5744-6559 bp Ori: ORU18442.1 Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: gene Location: 6935-7315 bp Ori: ORU18443.1 Feature: domain Description: COG3415 Location: 6947-7280 bp Feature: domain Description: COG341 5 Location: 6947-7280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977), COG3415 (Transposase )

Seq: MRJW01000047.1 Francisella tularensis subsp. holarctica strain FDC434 FDC434_47, whole genome shotgun sequence (46128 bp)
Overview 1 RT 1: 13999-17598 bp Neighborhood of RT #1 [13999, 17621] RVT-UG4 DsbB SufE Feature: gene Location: 13999-14196 bp Feature: gene Location: 14247-14660 bp Feature: gene Location: 15423-15650 bp Ori: ORU19098.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15489-15594 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15489-15594 bp Feature: gene Location: 15962-16498 bp Ori: ORU19099.1 Feature: domain Description: DsbB Location: 15995-16445 bp Feature: domain Description: DsbB Location: 15995-16445 bp Feature: gene Location: 17205-17621 bp Ori: ORU19100.1 Feature: domain Description: SufE Location: 17244-17598 bp Feature: domain Description: SufE Location: 172 44-17598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DsbB (pfam02600), SufE (pfam02657)

Seq: MRJW01000065.1 Francisella tularensis subsp. holarctica strain FDC434 FDC434_65, whole genome shotgun sequence (36517 bp)
Overview 1 RT 1: 31774-36450 bp Neighborhood of RT #1 [31774, 36500] rlmL KOG0539 RVT-Retrons DDE_3 Feature: gene Location: 31774-33927 bp Ori: ORU18769.1 Feature: domain Description: rlmL Location: 31786-33922 bp Feature: domain Description: rlmL Location: 3 1786-3 3 922 bp Feature: gene Location: 34002-34556 bp Ori: ORU18770.1 Feature: domain Description: KOG0539 Location: 34074-34551 bp Feature: domain Description: KOG053 9 Location: 3 4074-3 4551 bp Feature: gene Location: 35522-36016 bp Ori: ORU18771.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35540-35852 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 5540-3 5852 bp Feature: gene Location: 35988-36500 bp Ori: ORU18772.1 Feature: domain Description: DDE_3 Location: 36033-36450 bp Feature: domain Description: DDE_3 Location: 3 603 3 -3 6450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rlmL (PRK11783), KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), RVT-Retrons, DDE_3 (pfam13358)