myRT

myRT report for GCA_002100685.1_ASM210068v1

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Seq: MRJM01000034.1 Francisella tularensis subsp. holarctica strain FSC599 FSC599_34, whole genome shotgun sequence (7175 bp)
Overview 1 RT 1: 1-4944 bp Neighborhood of RT #1 [1, 4944] COG3415 DUF2797 RVT-UG4 Feature: gene Location: 1-241 bp Ori: ORU09171.1 Feature: domain Description: COG3415 Location: 10-178 bp Feature: domain Description: COG341 5 Location: 1 0-1 78 bp Feature: gene Location: 617-1432 bp Ori: ORU09169.1 Feature: domain Description: DUF2797 Location: 719-1415 bp Feature: domain Description: DUF2797 Location: 71 9-1 41 5 bp Feature: gene Location: 1673-2105 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1679-1859 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 679-1 859 bp Feature: gene Location: 2111-4382 bp Feature: gene Location: 4719-4944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DUF2797 (pfam10977), RVT-UG4

Seq: MRJM01000041.1 Francisella tularensis subsp. holarctica strain FSC599 FSC599_41, whole genome shotgun sequence (36598 bp)
Overview 1 RT 1: 1-4563 bp Neighborhood of RT #1 [1, 4568] DDE_3 RVT-Retrons KOG0539 rlmL Feature: gene Location: 1-354 bp Ori: ORU09048.1 Feature: domain Description: DDE_3 Location: 28-304 bp Feature: domain Description: DDE_3 Location: 2 8-304 bp Feature: gene Location: 326-820 bp Ori: ORU09049.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 344-656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 344-656 bp Feature: gene Location: 1786-2340 bp Ori: ORU09050.1 Feature: domain Description: KOG0539 Location: 1858-2335 bp Feature: domain Description: KOG0539 Location: 1858-2 335 bp Feature: gene Location: 2415-4568 bp Ori: ORU09051.1 Feature: domain Description: rlmL Location: 2427-4563 bp Feature: domain Description: rlmL Location: 2 42 7-4563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons, KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), rlmL (PRK11783)

Seq: MRJM01000048.1 Francisella tularensis subsp. holarctica strain FSC599 FSC599_48, whole genome shotgun sequence (45785 bp)
Overview 1 RT 1: 28353-31975 bp Neighborhood of RT #1 [28353, 31975] SufE DsbB RVT-UG4 Feature: gene Location: 28353-28769 bp Ori: ORU08942.1 Feature: domain Description: SufE Location: 28392-28746 bp Feature: domain Description: SufE Location: 283 92-28746 bp Feature: gene Location: 29476-30012 bp Ori: ORU08943.1 Feature: domain Description: DsbB Location: 29509-29959 bp Feature: domain Description: DsbB Location: 29509-29959 bp Feature: gene Location: 30324-30551 bp Ori: ORU08944.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30390-30495 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 03 90-3 0495 bp Feature: gene Location: 31314-31727 bp Feature: gene Location: 31778-31975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4