myRT

myRT report for GCA_002100715.1_ASM210071v1

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Seq: MRJV01000094.1 Francisella tularensis subsp. holarctica strain FSC026 FSC026_94, whole genome shotgun sequence (7242 bp)
Overview 1 RT 1: 2232-7133 bp Neighborhood of RT #1 [2232, 7242] RVT-UG4 DUF2797 COG3415 Feature: gene Location: 2232-2457 bp Feature: gene Location: 2794-5065 bp Feature: gene Location: 5071-5503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: gene Location: 5744-6559 bp Ori: ORU21732.1 Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: gene Location: 6935-7242 bp Ori: ORU21733.1 Feature: domain Description: COG3415 Location: 6947-7133 bp Feature: domain Description: COG341 5 Location: 6947-71 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977), COG3415 (Transposase )

Seq: MRJV01000072.1 Francisella tularensis subsp. holarctica strain FSC026 FSC026_72, whole genome shotgun sequence (45831 bp)
Overview 1 RT 1: 28332-31954 bp Neighborhood of RT #1 [28332, 31954] SufE DsbB RVT-UG4 Feature: gene Location: 28332-28748 bp Ori: ORU22147.1 Feature: domain Description: SufE Location: 28371-28725 bp Feature: domain Description: SufE Location: 2 8371-2 872 5 bp Feature: gene Location: 29455-29991 bp Ori: ORU22148.1 Feature: domain Description: DsbB Location: 29488-29938 bp Feature: domain Description: DsbB Location: 2 9488-2 9938 bp Feature: gene Location: 30303-30530 bp Ori: ORU22149.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30369-30474 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30369-30474 bp Feature: gene Location: 31293-31706 bp Feature: gene Location: 31757-31954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4

Seq: MRJV01000002.1 Francisella tularensis subsp. holarctica strain FSC026 FSC026_2, whole genome shotgun sequence (36457 bp)
Overview 1 RT 1: 1-4578 bp Neighborhood of RT #1 [1, 4583] DDE_3 RVT-Retrons KOG0539 rlmL Feature: gene Location: 1-369 bp Ori: ORU23781.1 Feature: domain Description: DDE_3 Location: 10-319 bp Feature: domain Description: DDE_3 Location: 10-3 19 bp Feature: gene Location: 341-835 bp Ori: ORU23782.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 359-671 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 59-671 bp Feature: gene Location: 1801-2355 bp Ori: ORU23783.1 Feature: domain Description: KOG0539 Location: 1873-2350 bp Feature: domain Description: KOG053 9 Location: 1873 -23 50 bp Feature: gene Location: 2430-4583 bp Ori: ORU23784.1 Feature: domain Description: rlmL Location: 2442-4578 bp Feature: domain Description: rlmL Location: 2442-4578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons, KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), rlmL (PRK11783)