myRT

myRT report for GCA_002100845.1_ASM210084v1

Download annotations/find similar RTs

Seq: MRKH01000006.1 Francisella tularensis subsp. holarctica strain FDC423 FDC423_6, whole genome shotgun sequence (36517 bp)
Overview 1 RT 1: 18-4739 bp Neighborhood of RT #1 [18, 4744] DDE_3 RVT-Retrons KOG0539 rlmL Feature: gene Location: 18-530 bp Ori: ORU42468.1 Feature: domain Description: DDE_3 Location: 63-480 bp Feature: domain Description: DDE_3 Location: 63-480 bp Feature: gene Location: 502-996 bp Ori: ORU42440.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 520-832 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 520-832 bp Feature: gene Location: 1962-2516 bp Ori: ORU42441.1 Feature: domain Description: KOG0539 Location: 2034-2511 bp Feature: domain Description: KOG0539 Location: 2034-251 1 bp Feature: gene Location: 2591-4744 bp Ori: ORU42442.1 Feature: domain Description: rlmL Location: 2603-4739 bp Feature: domain Description: rlmL Location: 2603-4739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons, KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), rlmL (PRK11783)

Seq: MRKH01000039.1 Francisella tularensis subsp. holarctica strain FDC423 FDC423_39, whole genome shotgun sequence (46128 bp)
Overview 1 RT 1: 28508-32130 bp Neighborhood of RT #1 [28508, 32130] SufE DsbB RVT-UG4 Feature: gene Location: 28508-28924 bp Ori: ORU41193.1 Feature: domain Description: SufE Location: 28547-28901 bp Feature: domain Description: SufE Location: 2 8547-2 8901 bp Feature: gene Location: 29631-30167 bp Ori: ORU41194.1 Feature: domain Description: DsbB Location: 29664-30114 bp Feature: domain Description: DsbB Location: 2 9664-30114 bp Feature: gene Location: 30479-30706 bp Ori: ORU41195.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30545-30650 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30545-30650 bp Feature: gene Location: 31469-31882 bp Feature: gene Location: 31933-32130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4

Seq: MRKH01000028.1 Francisella tularensis subsp. holarctica strain FDC423 FDC423_28, whole genome shotgun sequence (6944 bp)
Overview 1 RT 1: 2232-6542 bp Neighborhood of RT #1 [2232, 6559] RVT-UG4 DUF2797 Feature: gene Location: 2232-2457 bp Feature: gene Location: 2794-5065 bp Feature: gene Location: 5071-5503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077-5257 bp Feature: gene Location: 5744-6559 bp Ori: ORU41663.1 Feature: domain Description: DUF2797 Location: 5846-6542 bp Feature: domain Description: DUF2797 Location: 5846-6542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977)