myRT

myRT report for GCA_002101675.1_ASM210167v1

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Seq: LQOY01000212.1 Mycobacterium gordonae strain DSM 44160 contig_55, whole genome shotgun sequence (14656 bp)
Overview 1 RT 1: 1-5195 bp Neighborhood of RT #1 [1, 5195] RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 1-679 bp Feature: gene Location: 864-2651 bp Ori: ORV72412.1 Feature: domain Description: RVT_N Location: 894-1131 bp Feature: domain Description: RVT_N Location: 894-1 1 31 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1191-1851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 91 -1 851 bp Feature: domain Description: GIIM Note: maturase Location: 1920-2151 bp Feature: domain Description: GIIM Note: maturase Location: 1 920-21 51 bp Feature: gene Location: 3364-4602 bp Ori: ORV72413.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 3376-3847 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 3376-3847 bp Feature: domain Description: Transposase_20 Location: 4189-4441 bp Feature: domain Description: Transposase_20 Location: 41 89-4441 bp Feature: gene Location: 5016-5195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: LQOY01000058.1 Mycobacterium gordonae strain DSM 44160 contig_150, whole genome shotgun sequence (18139 bp)
Overview 1 RT 1: 9610-15453 bp Neighborhood of RT #1 [9610, 15473] CypX TetR_N TetR_C_35 RVT-GII GIIM MhpC Feature: gene Location: 9610-10911 bp Ori: ORV91427.1 Feature: domain Description: CypX Location: 9685-10900 bp Feature: domain Description: CypX Location: 9685-10900 bp Feature: gene Location: 10999-11589 bp Ori: ORV91428.1 Feature: domain Description: TetR_N Location: 11017-11149 bp Feature: domain Description: TetR_N Location: 11017-11149 bp Feature: domain Description: TetR_C_35 Location: 11218-11551 bp Feature: domain Description: TetR_C_35 Location: 112 18-11551 bp Feature: gene Location: 12336-13784 bp Ori: ORV91429.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12654-13341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 654-13341 bp Feature: domain Description: GIIM Note: maturase Location: 13416-13611 bp Feature: domain Description: GIIM Note: maturase Location: 13416-13611 bp Feature: gene Location: 14314-14529 bp Feature: gene Location: 14577-15473 bp Ori: ORV91431.1 Feature: domain Description: MhpC Location: 14601-15453 bp Feature: domain Description: MhpC Location: 14601-15453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), TetR_N (pfam00440), TetR_C_35 (pfam18556), RVT-GII, GIIM (pfam08388), MhpC (COG0596)

Seq: LQOY01000106.1 Mycobacterium gordonae strain DSM 44160 contig_194, whole genome shotgun sequence (28222 bp)
Overview 1 RT 1: 19813-26684 bp Neighborhood of RT #1 [19813, 26794] COG3653 AcrR RVT-CRISPR-like RnaI Feature: gene Location: 19813-21588 bp Ori: ORV82857.1 Feature: domain Description: COG3653 Location: 19819-21550 bp Feature: domain Description: COG3 653 Location: 19819-21550 bp Feature: gene Location: 21628-22254 bp Ori: ORV82851.1 Feature: domain Description: AcrR Location: 21667-22162 bp Feature: domain Description: AcrR Location: 21667-22162 bp Feature: gene Location: 22415-23788 bp Ori: ORV82852.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22697-23321 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22697-23 3 21 bp Feature: gene Location: 23739-25829 bp Feature: gene Location: 26018-26794 bp Ori: ORV82853.1 Feature: domain Description: RnaI Location: 26144-26684 bp Feature: domain Description: RnaI Location: 26144-26684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3653 (N-acyl-D-aspartate/D-glutamate deacylase ), AcrR (COG1309), RVT-CRISPR, RnaI (COG3719)