myRT

myRT report for GCA_002102115.1_ASM210211v1

Download annotations/find similar RTs

Seq: LQOS01000045.1 Mycolicibacterium doricum strain DSM 44339 contig_5, whole genome shotgun sequence (15428 bp)
Overview 1 RT 1: 4229-13170 bp Neighborhood of RT #1 [4229, 13170] CitB GIIM RVT-GII PinE RVT-GII RVT-GII PRK08326 Feature: gene Location: 4229-4903 bp Ori: ORV37708.1 Feature: domain Description: CitB Location: 4253-4871 bp Feature: domain Description: CitB Location: 4253-4871 bp Feature: gene Location: 6686-7036 bp Ori: ORV37716.1 Feature: domain Description: GIIM Note: maturase Location: 6692-6899 bp Feature: domain Description: GIIM Note: maturase Location: 6692-6899 bp Feature: gene Location: 7480-7899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7630-7900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7630-7900 bp Feature: gene Location: 8218-8418 bp Feature: gene Location: 8714-9205 bp Feature: gene Location: 9202-9903 bp Ori: ORV37711.1 Feature: domain Description: PinE Location: 9250-9790 bp Feature: domain Description: PinE Location: 9250-9790 bp Feature: gene Location: 9885-10154 bp Ori: ORV37712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9891-10128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9891 -1 01 28 bp Feature: gene Location: 10151-10447 bp Ori: ORV37713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10253-10364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0253-1 0364 bp Feature: gene Location: 11753-12682 bp Ori: ORV37717.1 Feature: domain Description: PRK08326 Location: 11852-12509 bp Feature: domain Description: PRK08326 Location: 1 1 852-1 2509 bp Feature: gene Location: 12685-13170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), GIIM (pfam08388), RVT-GII, PinE (COG1961), PRK08326 (R2-like ligand-binding oxidase)

Seq: LQOS01000040.1 Mycolicibacterium doricum strain DSM 44339 contig_45, whole genome shotgun sequence (105794 bp)
Overview 1 RT 1: 1-4727 bp Neighborhood of RT #1 [1, 4735] HTH_28 DDE_Tnp_1_4 RVT-GII GIIM MhpC UvrA Feature: gene Location: 1-265 bp Feature: domain Description: HTH_28 Location: 19-154 bp Feature: domain Description: HTH_2 8 Location: 19-154 bp Feature: gene Location: 394-1362 bp Ori: ORV38645.1 Feature: domain Description: DDE_Tnp_1_4 Location: 430-1219 bp Feature: domain Description: DDE_Tnp_1_4 Location: 430-12 19 bp Feature: gene Location: 1582-2955 bp Ori: ORV38646.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933-2557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933-2 557 bp Feature: domain Description: GIIM Note: maturase Location: 2650-2860 bp Feature: domain Description: GIIM Note: maturase Location: 2 650-2 860 bp Feature: gene Location: 3711-4499 bp Ori: ORV38647.1 Feature: domain Description: MhpC Location: 3741-4491 bp Feature: domain Description: MhpC Location: 3741-4491 bp Feature: gene Location: 4553-4735 bp Ori: ORV38648.1 Feature: domain Description: UvrA Location: 4556-4727 bp Feature: domain Description: UvrA Location: 4556-472 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), MhpC (COG0596), UvrA (COG0178)

Seq: LQOS01000046.1 Mycolicibacterium doricum strain DSM 44339 contig_50, whole genome shotgun sequence (74911 bp)
Overview 1 RT 1: 59345-67884 bp Neighborhood of RT #1 [59345, 67946] P-type_ATPase_Cu-like RVT_N RVT-GII GIIM COG3547 YafY Feature: gene Location: 59345-61429 bp Ori: ORV37702.1 Feature: domain Description: P-type_ATPase_Cu-like Location: 59495-61379 bp Feature: domain Description: P-type_ATPase_Cu-like Location: 59495-613 79 bp Feature: gene Location: 62466-62693 bp Feature: gene Location: 63395-65092 bp Feature: domain Description: RVT_N Location: 63452-63692 bp Feature: domain Description: RVT_N Location: 63 452-63 692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63749-64406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 749-64406 bp Feature: domain Description: GIIM Note: maturase Location: 64457-64691 bp Feature: domain Description: GIIM Note: maturase Location: 64457-64691 bp Feature: gene Location: 65244-66278 bp Feature: domain Description: COG3547 Location: 65256-66132 bp Feature: domain Description: COG3 547 Location: 65256-6613 2 bp Feature: gene Location: 66942-67946 bp Ori: ORV37682.1 Feature: domain Description: YafY Location: 66945-67884 bp Feature: domain Description: YafY Location: 66945-67884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_Cu-like (cd07552), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), YafY (COG2378)

Seq: LQOS01000054.1 Mycolicibacterium doricum strain DSM 44339 contig_58, whole genome shotgun sequence (96220 bp)
Overview 1 RT 1: 2449-7793 bp Neighborhood of RT #1 [2449, 7793] HTH_XRE RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_1 Feature: gene Location: 2449-2709 bp Ori: ORV36966.1 Feature: domain Description: HTH_XRE Location: 2521-2692 bp Feature: domain Description: HTH_XRE Location: 2521-2692 bp Feature: gene Location: 3057-3251 bp Feature: gene Location: 4339-5616 bp Ori: ORV36968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4555-5215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 555-5215 bp Feature: domain Description: GIIM Note: maturase Location: 5296-5527 bp Feature: domain Description: GIIM Note: maturase Location: 5296-5527 bp Feature: gene Location: 6418-7515 bp Ori: ORV37026.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 6448-6706 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 64 4 8-6706 bp Feature: domain Description: DDE_Tnp_1 Location: 6733-7417 bp Feature: domain Description: DDE_Tnp_1 Location: 6733-74 17 bp Feature: gene Location: 7557-7793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609)

Seq: LQOS01000033.1 Mycolicibacterium doricum strain DSM 44339 contig_39, whole genome shotgun sequence (128896 bp)
Overview 1 RT 1: 55317-60574 bp Neighborhood of RT #1 [55317, 60597] SUF_scaf_2 PaaD RVT-GII GIIM FAD_binding_3 OYE_like_5_FMN Feature: gene Location: 55317-55775 bp Ori: ORV39467.1 Feature: domain Description: SUF_scaf_2 Location: 55326-55740 bp Feature: domain Description: SUF_scaf_2 Location: 5 5 326-5 5 740 bp Feature: gene Location: 55772-56110 bp Ori: ORV39468.1 Feature: domain Description: PaaD Location: 55781-56099 bp Feature: domain Description: PaaD Location: 5 5 781-5 6099 bp Feature: gene Location: 56445-57539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56517-57141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 65 17-5 7141 bp Feature: domain Description: GIIM Note: maturase Location: 57237-57444 bp Feature: domain Description: GIIM Note: maturase Location: 5 7237-5 7444 bp Feature: gene Location: 58481-59422 bp Feature: domain Description: FAD_binding_3 Location: 58511-59420 bp Feature: domain Description: FAD_binding_3 Location: 5 85 11-5 9420 bp Feature: gene Location: 59503-60597 bp Ori: ORV39469.1 Feature: domain Description: OYE_like_5_FMN Location: 59521-60574 bp Feature: domain Description: OYE_like_5 _FMN Location: 5 95 21-605 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUF_scaf_2 (TIGR01994), PaaD (TIGR02286), RVT-GII, GIIM (pfam08388), FAD_binding_3 (pfam01494), OYE_like_5_FMN (cd04747)