myRT

myRT report for GCA_002104405.1_ASM210440v1

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Seq: NCWA01000111.1 Escherichia coli strain Ec6M Contig_115, whole genome shotgun sequence (2930 bp)
Overview 1 RT 1: 2-2236 bp Neighborhood of RT #1 [2, 2236] DDE_Tnp_IS1 RVT-GII Feature: gene Location: 2-70 bp Ori: OSC12882.1 Feature: domain Description: DDE_Tnp_IS1 Location: 5-65 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5-65 bp Feature: gene Location: 83-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 2-302 bp Feature: gene Location: 661-1338 bp Feature: gene Location: 1868-2236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-GII

Seq: NCWA01000055.1 Escherichia coli strain Ec6M Contig_140, whole genome shotgun sequence (31083 bp)
Overview 1 RT 1: 1819-7928 bp Neighborhood of RT #1 [1819, 7987] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 1819-2739 bp Ori: OSC15904.1 Feature: domain Description: AbiEii Location: 1861-2602 bp Feature: domain Description: AbiEii Location: 1861-2 602 bp Feature: gene Location: 2726-3529 bp Ori: OSC15905.1 Feature: domain Description: AbiEi_3_N Location: 2759-3020 bp Feature: domain Description: AbiEi_3_N Location: 2 759-302 0 bp Feature: domain Description: AbiEi_3 Location: 3032-3488 bp Feature: domain Description: AbiEi_3 Location: 3032 -3488 bp Feature: gene Location: 3824-7033 bp Ori: OSC15906.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4352-4841 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4352 -4841 bp Feature: domain Description: nitrilase Location: 6347-6944 bp Feature: domain Description: nitrilase Location: 6347-6944 bp Feature: gene Location: 7380-7850 bp Feature: gene Location: 7847-7987 bp Ori: OSC15908.1 Feature: domain Description: SfsB Location: 7856-7928 bp Feature: domain Description: SfsB Location: 7856-792 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: NCWA01000030.1 Escherichia coli strain Ec6M Contig_182, whole genome shotgun sequence (63668 bp)
Overview 1 RT 1: 19218-22314 bp 2 RT 2: 47459-52485 bp Neighborhood of RT #1 [19218, 22314] COG2085 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [47459, 52493] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 19218-19631 bp Ori: OSC17305.1 Feature: domain Description: COG2085 Location: 19317-19464 bp Feature: domain Description: COG2085 Location: 193 17-19464 bp Feature: gene Location: 19558-20045 bp Feature: domain Description: PHA02517 Location: 19561-19732 bp Feature: domain Description: PHA02517 Location: 19561-1973 2 bp Feature: gene Location: 20126-21649 bp Ori: OSC17306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20399-21131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 99-2113 1 bp Feature: domain Description: GIIM Note: maturase Location: 21206-21404 bp Feature: domain Description: GIIM Note: maturase Location: 21206-21404 bp Feature: gene Location: 21603-22028 bp Feature: gene Location: 21943-22314 bp Feature: gene Location: 47459-48364 bp Feature: gene Location: 48338-48625 bp Feature: gene Location: 48850-49389 bp Ori: OSC17333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49180-49258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49180-49258 bp Feature: gene Location: 49417-49938 bp Ori: OSC17334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49423-49705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49423 -49705 bp Feature: domain Description: GIIM Note: maturase Location: 49753-49933 bp Feature: domain Description: GIIM Note: maturase Location: 49753 -4993 3 bp Feature: gene Location: 51003-51191 bp Feature: gene Location: 51264-52493 bp Ori: OSC17336.1 Feature: domain Description: YesM Location: 51744-52485 bp Feature: domain Description: YesM Location: 51744-52485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YesM (COG2972)