myRT

myRT report for GCA_002105235.1_ASM210523v1

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Seq: MSFV01000010.1 Vibrio harveyi strain LG353 NODE_19_length_49567_cov_77.0302_ID_37, whole genome shotgun sequence (49567 bp)
Overview 1 RT 1: 238-6058 bp Neighborhood of RT #1 [238, 6099] RVT_N RVT-GII GIIM SIR2-like DUF4020 Feature: gene Location: 238-1869 bp Feature: RT Description: RVT_N Location: 445-688 bp Feature: RT Description: RVT_N Location: 445-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1 360 bp Feature: domain Description: GIIM Note: maturase Location: 1420-1645 bp Feature: domain Description: GIIM Note: maturase Location: 1 420-1 645 bp Feature: gene Location: 1905-2228 bp Feature: gene Location: 2596-6099 bp Feature: domain Description: SIR2-like Location: 2653-3283 bp Feature: domain Description: SIR2-like Location: 2653-3283 bp Feature: domain Description: DUF4020 Location: 5590-6058 bp Feature: domain Description: DUF4020 Location: 5590-6058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SIR2-like (cd01406), DUF4020 (pfam13212)

Seq: MSFV01000017.1 Vibrio harveyi strain LG353 NODE_25_length_28575_cov_138.1_ID_49, whole genome shotgun sequence (28575 bp)
Overview 1 RT 1: 14068-18463 bp Neighborhood of RT #1 [14068, 18627] COG3950 RVT-Retrons FimT YdjM Feature: gene Location: 14068-14235 bp Feature: gene Location: 14329-15954 bp Feature: domain Description: COG3950 Location: 14512-15835 bp Feature: domain Description: COG3950 Location: 14512 -15835 bp Feature: gene Location: 15947-16891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16046-16643 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16046-16643 bp Feature: gene Location: 17496-18065 bp Feature: domain Description: FimT Location: 17541-17718 bp Feature: domain Description: FimT Location: 17541-17718 bp Feature: gene Location: 18109-18627 bp Feature: domain Description: YdjM Location: 18130-18463 bp Feature: domain Description: YdjM Location: 18130-18463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, FimT (COG4970), YdjM (pfam04307)