myRT

myRT report for GCA_002106355.1_ASM210635v1

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Seq: NBPC01000016.1 Salmonella enterica subsp. enterica serovar Holcomb strain NY_FSL C7-1028 NODE_16_length_96792_cov_43.1928_ID_4091, whole genome shotgun sequence (96792 bp)
Overview 1 RT 1: 19375-25212 bp Neighborhood of RT #1 [19375, 25217] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 19375-19728 bp Ori: OSD33055.1 Feature: domain Description: DUF4156 Location: 19444-19720 bp Feature: domain Description: DUF41 56 Location: 1 9444-1 9720 bp Feature: gene Location: 20092-20322 bp Ori: OSD33115.1 Feature: domain Description: DUF2188 Location: 20110-20287 bp Feature: domain Description: DUF21 88 Location: 201 1 0-20287 bp Feature: gene Location: 20468-22141 bp Ori: OSD33056.1 Feature: domain Description: RVT_N Location: 20531-20765 bp Feature: domain Description: RVT_N Location: 20531 -20765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20819-21464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081 9-21 464 bp Feature: domain Description: GIIM Note: maturase Location: 21518-21749 bp Feature: domain Description: GIIM Note: maturase Location: 21 51 8-21 749 bp Feature: domain Description: HNHc Note: nucleases Location: 21959-22115 bp Feature: domain Description: HNHc Note: nucleases Location: 21 959-221 1 5 bp Feature: gene Location: 23234-24880 bp Ori: OSD33057.1 Feature: domain Description: groEL Location: 23240-24866 bp Feature: domain Description: groEL Location: 23240-24866 bp Feature: gene Location: 24924-25217 bp Ori: OSD33058.1 Gene: groES Feature: domain Description: groES Location: 24927-25212 bp Feature: domain Description: groES Location: 24927-2521 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: NBPC01000004.1 Salmonella enterica subsp. enterica serovar Holcomb strain NY_FSL C7-1028 NODE_4_length_331413_cov_41.8584_ID_4067, whole genome shotgun sequence (331413 bp)
Overview 1 RT 1: 170344-177320 bp Neighborhood of RT #1 [170344, 177331] PRK09678 RVT-UG5 nitrilase PRK09692 CAD1 Feature: gene Location: 170344-170616 bp Ori: OSD38402.1 Feature: domain Description: PRK09678 Location: 170353-170545 bp Feature: domain Description: PRK09678 Location: 170353-170545 bp Feature: gene Location: 170952-171641 bp Feature: gene Location: 171638-174523 bp Ori: OSD38404.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 172115-172643 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 172 115-172 643 bp Feature: domain Description: nitrilase Location: 173822-174449 bp Feature: domain Description: nitrilase Location: 17382 2 -174449 bp Feature: gene Location: 174591-175841 bp Ori: OSD38405.1 Feature: domain Description: PRK09692 Location: 174600-175800 bp Feature: domain Description: PRK09692 Location: 174600-175800 bp Feature: gene Location: 176312-177331 bp Ori: OSD38406.1 Feature: domain Description: CAD1 Location: 176330-177320 bp Feature: domain Description: CAD1 Location: 176330-17732 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), CAD1 (cd05283)