myRT

myRT report for GCA_002106505.1_ASM210650v1

Download annotations/find similar RTs

Seq: NBPR01000004.1 Salmonella enterica subsp. enterica serovar Holcomb strain NY_FSL C7-650 NODE_4_length_331413_cov_40.9338_ID_4187, whole genome shotgun sequence (331413 bp)
Overview 1 RT 1: 170344-177320 bp Neighborhood of RT #1 [170344, 177331] PRK09678 RVT-UG5 nitrilase PRK09692 CAD1 Feature: gene Location: 170344-170616 bp Ori: OSE06356.1 Feature: domain Description: PRK09678 Location: 170353-170545 bp Feature: domain Description: PRK09678 Location: 1 70353-1 70545 bp Feature: gene Location: 170952-171641 bp Feature: gene Location: 171638-174523 bp Ori: OSE06358.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 172115-172643 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 721 1 5-1 72643 bp Feature: domain Description: nitrilase Location: 173822-174449 bp Feature: domain Description: nitrilase Location: 1 73822-1 74449 bp Feature: gene Location: 174591-175841 bp Ori: OSE06359.1 Feature: domain Description: PRK09692 Location: 174600-175800 bp Feature: domain Description: PRK09692 Location: 1 74600-1 75800 bp Feature: gene Location: 176312-177331 bp Ori: OSE06360.1 Feature: domain Description: CAD1 Location: 176330-177320 bp Feature: domain Description: CAD1 Location: 1 76330-1 77320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), CAD1 (cd05283)

Seq: NBPR01000010.1 Salmonella enterica subsp. enterica serovar Holcomb strain NY_FSL C7-650 NODE_10_length_202948_cov_43.7931_ID_4199, whole genome shotgun sequence (202948 bp)
Overview 1 RT 1: 19839-25676 bp Neighborhood of RT #1 [19839, 25681] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 19839-20192 bp Ori: OSE03692.1 Feature: domain Description: DUF4156 Location: 19908-20184 bp Feature: domain Description: DUF4156 Location: 19908-2 0184 bp Feature: gene Location: 20556-20786 bp Ori: OSE03841.1 Feature: domain Description: DUF2188 Location: 20574-20751 bp Feature: domain Description: DUF2 188 Location: 2 0574-2 0751 bp Feature: gene Location: 20932-22605 bp Ori: OSE03693.1 Feature: domain Description: RVT_N Location: 20995-21229 bp Feature: domain Description: RVT_N Location: 2 0995-2 12 2 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21283-21928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 83-2 192 8 bp Feature: domain Description: GIIM Note: maturase Location: 21982-22213 bp Feature: domain Description: GIIM Note: maturase Location: 2 1982 -2 2 2 13 bp Feature: domain Description: HNHc Note: nucleases Location: 22423-22579 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 42 3-2 2 579 bp Feature: gene Location: 23698-25344 bp Ori: OSE03694.1 Feature: domain Description: groEL Location: 23704-25330 bp Feature: domain Description: groEL Location: 2 3704-2 5330 bp Feature: gene Location: 25388-25681 bp Ori: OSE03695.1 Gene: groES Feature: domain Description: groES Location: 25391-25676 bp Feature: domain Description: groES Location: 2 5391-2 5676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)